Generation and characterization of inducible KRAB-dCas9 iPSCs from primates for cross-species CRISPRi

oleh: Fiona C. Edenhofer, Anita Térmeg, Mari Ohnuki, Jessica Jocher, Zane Kliesmete, Eva Briem, Ines Hellmann, Wolfgang Enard

Format: Article
Diterbitkan: Elsevier 2024-06-01

Deskripsi

Summary: Comparisons of molecular phenotypes across primates provide unique information to understand human biology and evolution, and single-cell RNA-seq CRISPR interference (CRISPRi) screens are a powerful approach to analyze them. Here, we generate and validate three human, three gorilla, and two cynomolgus iPS cell lines that carry a dox-inducible KRAB-dCas9 construct at the AAVS1 locus. We show that despite variable expression levels of KRAB-dCas9 among lines, comparable downregulation of target genes and comparable phenotypic effects are observed in a single-cell RNA-seq CRISPRi screen. Hence, we provide valuable resources for performing and further extending CRISPRi in human and non-human primates.