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Abstract The Hindon River is a major freshwater resource predominantly for the rural population of the western region in Uttar Pradesh, India. The river receives industrial wastewaters having heavy metals concentration at potentially toxic levels. The focus of this study is to estimate the heavy metals (such as Fe, Cu, Zn and Cr) contamination in the Hindon River using Nemerow pollution index followed by environmetrics to identify their pollution source. The water samples are collected from 28 industrial discharge sites in the river to analyze metals concentration during pre- and post-monsoon months. The estimated Nemerow pollution index value is more than 3 indicating severely contaminated river water. Principal component analysis results confirm that Fe and Cu are the major contaminants in the river, which indicates the direct input of wastewater from electroplating industries. Therefore, it is suggested that a strategic eco-conservation plan should be formulated and implemented in advance to prevent the deterioration of the water quality and aquatic life.