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Binary Expression Enhances Reliability of Messaging in Gene Networks
oleh: Leonardo R. Gama, Guilherme Giovanini, Gábor Balázsi, Alexandre F. Ramos
Format: | Article |
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Diterbitkan: | MDPI AG 2020-04-01 |
Deskripsi
The promoter state of a gene and its expression levels are modulated by the amounts of transcription factors interacting with its regulatory regions. Hence, one may interpret a gene network as a communicating system in which the state of the promoter of a gene (the <i>source</i>) is communicated by the amounts of transcription factors that it expresses (the <i>message</i>) to modulate the state of the promoter and expression levels of another gene (the <i>receptor</i>). The reliability of the gene network dynamics can be quantified by Shannon’s entropy of the message and the mutual information between the message and the promoter state. Here we consider a stochastic model for a binary gene and use its exact steady state solutions to calculate the entropy and mutual information. We show that a slow switching promoter with long and equally standing ON and OFF states maximizes the mutual information and reduces entropy. That is a binary gene expression regime generating a high variance message governed by a bimodal probability distribution with peaks of the same height. Our results indicate that Shannon’s theory can be a powerful framework for understanding how bursty gene expression conciliates with the striking spatio-temporal precision exhibited in pattern formation of developing organisms.