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In this paper is presented a method for neural activity estimation over the brain that take into account, for the solution of the inverse problem, a dynamic model for the neural activity in a realistic head model calculated with bounded elements method, according to a physiologically based model that describes the real interaction between neurons. The solution of the inverse problem is calculated using high performance computing. This analysis is performed for simulated EEG signals for SNR of 25 dB, 15 dB and 5 dB. The obtained results show the robustness of the estimation method that includes the dynamic model in comparison with the static model for several levels of noise.