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<i>Computer-aided engineering</i> (CAE) is an essential tool in a digital twin not only to verify and validate a virtual twin before it is transformed into a physical twin, but also to monitor the use of the physical twin for enhanced sustainability. This paper aims to develop a CAE model for a digital twin to predict the fatigue life of materials. Fatigue damage is represented by the size of a macro-crack that grows with a cluster of micro-cracks subjected to three different loads. The growth angle is related to the maximum circumferential tensile stress, and the growth rate is determined by the <i>stress intensity factor</i> (SIF) at the crack tip. The prediction model takes into consideration the main factors, including micro-cracks, crack closures, and initial configurations. Simulations are developed for the growth of macro-cracks with <i>radially distributed micro-cracks</i> and <i>randomly distributed micro-cracks</i>, and we find that (1) the macro-crack in the second case grows faster than that in the first case; (2) a pure shear load affects the macro-crack propagation more than a combined shear and tensile load or a tensional load; (3) the external stresses required to propagate are reduced when the inclination angle of the micro-crack is small and within (−25° < <i>β</i> < 25°); (4) micro-cracks affect the propagating path of the macro-crack and generally guide the direction of propagation. The developed model has been verified and validated experimentally for its effectiveness in predicting the fracture or fatigue damage of a structure.