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We present a case involving a patient whose clinical phenotype aligns with oculocutaneous albinism (OCA), yet exhibits a complex genotype primarily characterized by variants of unknown significance (VUS). An 11-year-old boy manifested iris hypopigmentation and translucency, pronounced photophobia, diminished visual acuity and stereopsis, nystagmus, reduced pigmentation of the retina, and foveal hypoplasia. Genetic testing was performed. A heterozygous missense VUS <i>CAPN5</i> c.230A>G, p.(Gln77Arg), a heterozygous missense VUS <i>TYR</i> c.1307G>C, p.(Gly436Ala), and a heterozygous missense variant <i>TYR</i> c.1205G>A, p.(Arg402Gln) which was classified as a risk factor, were identified. We hypothesized that the <i>TYR</i> c.1307G>C, p.(Gly436Ala) variant is in genetic disequilibrium with the <i>TYR</i> c.1205G>A, p.(Arg402Gln) variant leading to deficient expression of melanogenic enzymes in retinal cells, resulting in the manifestation of mild OCA. Additionally, this study represents the case where we did not detect chiasmal misrouting in visual evoked potentials, nor did we observe a shift in the distribution of ganglion cell thickness from a temporal to a central position. Moreover, our patient’s case supports the probable benign nature of the <i>CAPN5</i> c.230A>G, p.(Gln77Arg) variant.