Genome-Wide Identification of the U-Box E3 Ubiquitin Ligase Gene Family in Cabbage (<i>Brassica oleracea</i> var. <i>capitata</i>) and Its Expression Analysis in Response to Cold Stress and Pathogen Infection

oleh: Peiwen Wang, Lin Zhu, Ziheng Li, Mozhen Cheng, Xiuling Chen, Aoxue Wang, Chao Wang, Xiaoxuan Zhang

Format: Article
Diterbitkan: MDPI AG 2023-03-01

Deskripsi

Plant U-box E3 ubiquitin ligases (PUBs) play an important role in growth, development, and stress responses in many species. However, the characteristics of U-box E3 ubiquitin ligase genes in cabbage (<i>Brassica oleracea</i> var. <i>capitata</i>) are still unclear. Here, we carry out the genome-wide analysis of U-box E3 ubiquitin ligase genes in cabbage and identify 65 <i>Brassica oleracea</i> var. <i>capitata</i> U-box E3 ubiquitin ligase (BoPUB) genes in the cabbage genome. Phylogenetic analysis indicates that all 65 <i>BoPUB</i> genes are grouped into six subfamilies, whose members are relatively conserved in the protein domain and exon-intron structure. Chromosomal localization and synteny analyses show that segmental and tandem duplication events contribute to the expansion of the U-box E3 ubiquitin ligase gene family in cabbage. Protein interaction prediction presents that heterodimerization may occur in BoPUB proteins. In silico promoter analysis and spatio-temporal expression profiling of <i>BoPUB</i> genes reveal their involvement in light response, phytohormone response, and growth and development. Furthermore, we find that <i>BoPUB</i> genes participate in the biosynthesis of cuticular wax and in response to cold stress and pathogenic attack. Our findings provide a deep insight into the U-box E3 ubiquitin ligase gene family in cabbage and lay a foundation for the further functional analysis of <i>BoPUB</i> genes in different biological processes.