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<p>Abstract</p> <p>Background</p> <p>ECE-CYC2 clade genes known in patterning floral dorsoventral asymmetry (zygomorphy) in <it>Antirrhinum majus </it>are conserved in the dorsal identity function including arresting the dorsal stamen. However, it remains uncertain whether the same mechanism underlies abortion of the ventral stamens, an important morphological trait related to evolution and diversification of zygomorphy in Lamiales <it>sensu lato</it>, a major clade of predominantly zygomorphically flowered angiosperms. <it>Opithandra </it>(Gesneriaceae) is of particular interests in addressing this question as it is in the base of Lamiales <it>s.l</it>., an early representative of this type zygomorphy.</p> <p>Results</p> <p>We investigated the expression patterns of four ECE-CYC2 clade genes and two putative target <it>cyclinD3 </it>genes in <it>Opithandra </it>using RNA <it>in situ </it>hybridization and RT-PCR. <it>OpdCYC </it>gene expressions were correlated with abortion of both dorsal and ventral stamens in <it>Opithandra</it>, strengthened by the negatively correlated expression of their putative target <it>OpdcyclinD3 </it>genes. The complement of <it>OpdcyclinD3 </it>to <it>OpdCYC </it>expressions further indicated that <it>OpdCYC </it>expressions were related to the dorsal and ventral stamen abortion through negative effects on <it>OpdcyclinD3 </it>genes.</p> <p>Conclusion</p> <p>These results suggest that ECE-CYC2 clade TCP genes are not only functionally conserved in the dorsal stamen repression, but also involved in arresting ventral stamens, a genetic mechanism underlying the establishment of zygomorphy with abortion of both the dorsal and ventral stamens evolved in angiosperms, especially within Lamiales <it>s.l</it>.</p>