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Shale in the Wufeng Formation of the upper Ordovician and Longmaxi Formation of lower Silurian in the Sichuan Basin and its surrounding area is widespread. Shale gas resources are abundant. Shale gas in the Wufeng Formation and the Longmaxi Formation in the basin has been a major breakthrough. The basin margin transition zone in southeastern Chongqing is in an intense tectonic activity area, which is more complicated and special than the stable stratum in the basin. Therefore, it is necessary to put forward higher requirements for preservation conditions and enrichment pattern evaluation of shale gas. Therefore, in view of the complicated structural pattern of the basin margin transition zone in southeastern Chongqing, the preservation conditions and reservoir forming patterns are analyzed through structural evolution, uplift and denudation, fault development, structural styles, roof and floor conditions, and formation pressure. The results show that the main reason for the formation of normal pressure is the late uplift, denudation and fault development. The pressure coefficient from the basin to the outer layer is changed from overpressure to normal pressure, and structural transformation forms the preservation form of shale gas with narrow and steep residual anticline, wide residual syncline and residual slope. The preservation condition evaluation of normal shale gas should be based on structural factors such as structural evolution, structural style, uplift and denudation degree and fault development degree, with formation pressure coefficient as reference condition, combined with material basic conditions such as roof and floor conditions and formation thickness. The findings of this study can help for better understanding of the “sweet spot” prediction of normal pressure shale gas in complex structural area.