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In this study, the complete mitochondrial genome (mitogenome) of Gibbovalva kobusi was at first sequenced by high-throughput sequencing. As a circular DNA molecule, the complete mitogenome is 15,717 bp in length (GeneBank accession number: MK956103) and consists of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and an AT-rich region. The nucleotide composition is A (41.0%), C (11.6%), G (7.9%), and T (39.5%). Based on the sequences of complete mitogenome from 11 species as ingroups and 3 superfamily Tineoidea species as outgroups, the phylogenetic trees were constructed. The family Gracilariidae as a monophyletic clade is strongly supported by the bootstrap value of 100%.