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Characterization of Non-O157 <i>Escherichia coli</i> from Cattle Faecal Samples in the North-West Province of South Africa
oleh: Emmanuel W. Bumunang, Tim A. McAllister, Rahat Zaheer, Rodrigo Ortega Polo, Kim Stanford, Robin King, Yan D. Niu, Collins N. Ateba
Format: | Article |
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Diterbitkan: | MDPI AG 2019-08-01 |
Deskripsi
<i>Escherichia coli</i> are commensal bacteria in the gastrointestinal tract of mammals, but some strains have acquired Shiga-toxins and can cause enterohemorrhagic diarrhoea and kidney failure in humans. Shiga-toxigenic <i>E. coli</i> (STEC) strains such as <i>E. coli</i> O157:H7 and some non-O157 strains also contain other virulence traits, some of which contribute to their ability to form biofilms. This study characterized non-O157 <i>E. coli</i> from South African cattle faecal samples for their virulence potential, antimicrobial resistance (AMR), biofilm-forming ability, and genetic relatedness using culture-based methods, pulsed-field gel electrophoresis (PFGE), and whole genome sequencing (WGS). Of 80 isolates screened, 77.5% (62/80) possessed Shiga-toxins genes. Of 18 antimicrobials tested, phenotypic resistance was detected against seven antimicrobials. Resistance ranged from 1.3% (1/80) for ampicillin-sulbactam to 20% (16/80) for tetracycline. Antimicrobial resistance genes were infrequently detected except for <i>tetA</i>, which was found in 31.3% (25/80) and <i>tetB</i> detected in 11.3% (9/80) of isolates. Eight biofilm-forming associated genes were detected in STEC isolates (n = 62) and two non-STEC strains. Prevalence of biofilm genes ranged from 31.3% (20/64) for <i>ehaA<sup>β</sup></i> passenger to 100% for curli structural subunit (<i>csgA</i>) and curli regulators (<i>csgA</i> and <i>crl</i>). Of the 64 STEC and multi-drug resistant isolates, 70.3% (45/64) and 37.5% (24/64) formed strong biofilms on polystyrene at 22 and 37 °C, respectively. Of 59 isolates screened by PFGE, 37 showed unique patterns and the remaining isolates were grouped into five clusters with a ≥90% relatedness. In silico serotyping following WGS on a subset of 24 non-O157 STEC isolates predicted 20 serotypes comprising three novel serotypes, indicating their diversity as potential pathogens. These findings show that North West South African cattle harbour genetically diverse, virulent, antimicrobial-resistant and biofilm-forming non-O157 <i>E. coli</i>. Biofilm-forming ability may increase the likelihood of persistence of these pathogens in the environment and facilitate their dissemination, increasing the risk of cross contamination or establishment of infections in hosts.