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Patients with inflammatory bowel disease (IBD) have a higher risk of venous thrombosis compared with the general population. The most common sites of venous thrombosis in IBD patients are the deep veins of the legs, pulmonary system, and portal and mesenteric veins. However, cerebral venous thrombosis (CVT) is rarely associated with IBD. In patients with IBD complicated by CVT, favorable outcomes are possible with early diagnosis and appropriate treatment. However, when patients are not treated, the mortality rate can be as high as 50%. Here, we present a 32-year-old man with the complaints of headache and seizures earlier diagnosed with ulcerative colitis. A diagnosis of CVT was made based on imaging findings. Thromboembolism is an extraintestinal complication of IBD, more frequently venous thrombosis and pulmonary thromboembolism.