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In this study, the effects of coatings made of chitosan (Chi) incorporating thyme essential oil (TEO) on lipid oxidation and changing color indexes of walnut kernels were investigated. Chi: pure, in accompany with TEO at concentrations of 500 and 1000 microliter per liter, in an aqueous coating solution, with different packaging methods: Gunny sack, polypropylene and active packaging, compared with control walnut, were used and stored at 4ºC and 25ºC. The study was performed as factorial experiment based on a complete randomized design. The results showed that amounts of color indexes in treated samples decreased. The samples stored at 4°C contained minimum moisture fluctuations in all packaging methods. The peroxide values and conjugated diene values at 4°C were lower than those at 25°C. Treatments did not have positive effect on free fatty acids of walnut kernels. During the storage, shelf life of walnut kernels prolonged with active packaging and chitosan coating at 4ºC.