The complete mitochondrial genomes of two ghost moths, <it>Thitarodes renzhiensis</it> and <it>Thitarodes yunnanensis</it>: the ancestral gene arrangement in Lepidoptera

oleh: Cao Yong-Qiang, Ma Chuan, Chen Ji-Yue, Yang Da-Rong

Format: Article
Diterbitkan: BMC 2012-06-01

Deskripsi

<p>Abstract</p> <p>Background</p> <p>Lepidoptera encompasses more than 160,000 described species that have been classified into 45–48 superfamilies. The previously determined Lepidoptera mitochondrial genomes (mitogenomes) are limited to six superfamilies of the lineage Ditrysia. Compared with the ancestral insect gene order, these mitogenomes all contain a tRNA rearrangement. To gain new insights into Lepidoptera mitogenome evolution, we sequenced the mitogenomes of two ghost moths that belong to the non-ditrysian lineage Hepialoidea and conducted a comparative mitogenomic analysis across Lepidoptera.</p> <p>Results</p> <p>The mitogenomes of <it>Thitarodes renzhiensis</it> and <it>T</it>. <it>yunnanensis</it> are 16,173 bp and 15,816 bp long with an A + T content of 81.28 % and 82.34 %, respectively. Both mitogenomes include 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and the A + T-rich region. Different tandem repeats in the A + T-rich region mainly account for the size difference between the two mitogenomes. All the protein-coding genes start with typical mitochondrial initiation codons, except for <it>cox1</it> (CGA) and <it>nad1</it> (TTG) in both mitogenomes. The anticodon of <it>trnS(AGN)</it> in <it>T. renzhiensis</it> and <it>T. yunnanensis</it> is UCU instead of the mostly used GCU in other sequenced Lepidoptera mitogenomes. The 1,584-bp sequence from <it>rrnS</it> to <it>nad2</it> was also determined for an unspecified ghost moth (<it>Thitarodes</it> sp.), which has no repetitive sequence in the A + T-rich region. All three <it>Thitarodes</it> species possess the ancestral gene order with <it>trnI</it>-<it>trnQ</it>-<it>trnM</it> located between the A + T-rich region and <it>nad2</it>, which is different from the gene order <it>trnM</it>-<it>trnI</it>-<it>trnQ</it> in all previously sequenced Lepidoptera species. The formerly identified conserved elements of Lepidoptera mitogenomes (i.e. the motif ‘ATAGA’ and poly-T stretch in the A + T-rich region and the long intergenic spacer upstream of <it>nad2</it>) are absent in the <it>Thitarodes</it> mitogenomes.</p> <p>Conclusion</p> <p>The mitogenomes of <it>T. renzhiensis</it> and <it>T. yunnanensis</it> exhibit unusual features compared with the previously determined Lepidoptera mitogenomes. Their ancestral gene order indicates that the tRNA rearrangement event(s) likely occurred after Hepialoidea diverged from other lepidopteran lineages. Characterization of the two ghost moth mitogenomes has enriched our knowledge of Lepidoptera mitogenomes and contributed to our understanding of the mechanisms underlying mitogenome evolution, especially gene rearrangements.</p>