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Eukaryotic filamentous yellow-green algae from the <i>Tribonema</i> genus are considered to be excellent candidates for biofuels and value-added products, owing to their ability to grow under autotrophic, mixotrophic, and heterotrophic conditions and synthesize large amounts of fatty acids, especially unsaturated fatty acids. To elucidate the molecular mechanism of fatty acids and/or establish the organism as a model strain, the development of genetic methods is important. Towards this goal, here, we constructed a genetic transformation method to introduce exogenous genes for the first time into the eukaryotic filamentous alga <i>Tribonema minus</i> via particle bombardment. In this study, we constructed pSimple-<i>tub</i>-<i>eGFP</i> and pEASY-<i>tub</i>-<i>nptⅡ</i> plasmids in which the green fluorescence protein (<i>eGFP</i>) gene and the neomycin phosphotransferase Ⅱ-encoding G418-resistant gene (<i>nptⅡ</i>) were flanked by the <i>T. minus</i>-derived tubulin gene (<i>tub</i>) promoter and terminator, respectively. The two plasmids were introduced into <i>T. minus</i> cells through particle-gun bombardment under various test conditions. By combining agar and liquid selecting methods to exclude the pseudotransformants under long-term antibiotic treatment, plasmids pSimple-<i>tub-eGFP</i> and pEASY-<i>tub- nptⅡ</i> were successfully transformed into the genome of <i>T. minus</i>, which was verified using green fluorescence detection and the polymerase chain reaction, respectively. These results suggest new possibilities for efficient genetic engineering of <i>T. minus</i> for future genetic improvement.