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Friction plays a critical role in the function and maintenance of small-scale structures, where the conventional Coulomb friction law often fails. To probe the friction at small scales, here we present a molecular dynamics study on the process of dragging graphene nanoribbons on waved graphene substrates. The simulation shows that the induced friction on graphene with zero waviness is ultra-low and closely related to the surface energy barrier. On waved graphenes, the friction generally increases with the amplitude of the wave at a fixed period, but anomalously increases and then decreases with the period at a fixed amplitude. These findings provide insights into the ultra-low friction at small scales, as well as some guidelines into the fabrication of graphene-based nano-composites with high performance.