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Microorganisms are naturally associated with plants in several ways. The study was conducted to isolate bacteria endophytes from the internal cells of roots, stems, leaves, and capitula of Senecio glaucus collected from 2 diverse (coastal and desert) habitats in Egypt. A total of 10 endophytic bacteria were obtained from the isolation; the highest diversity of bacterial endophytes was observed in desert samples roots and leaves. The isolates were recognized based on morphology, biochemical and 16S rRNA sequence genes. All isolates indicated the ability for enzyme production as amylase, cellulase, lipase, catalase, and protease in their biochemical descriptions; analyses also gave a significant indication of their potential to produce plant growth hormones, as their ability to dissolve Phosphate. In the world and Egypt, we are the first to report bacterial endophytes isolated from Senecio glaucus. This study could aid in determining the role of endophytic bacteria in severe habitats, as well as their potential applications in medicine, bioremediation, agriculture, and industry.