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Novel cubic microstructures for the purposes of plasmonic Ag-based NPs were made using biological wastes produced from a microbial culture of <i>Bacillus cereus</i> (<i>B. cereus</i>) employing a bottom-up approach for the biosynthesis of metal-based nanomaterials. The unique surface plasmon resonance (SPR) of the as-prepared Ag-based NPs was detected at 405 nm. The infra-red spectrum revealed that the used biological waste effectively stabilized our Ag-based NPs. Scanning and transmission electron microscopes were used in order to evaluate the sizes and shapes of the distinctive structures present in our samples. The Ag NPs had a face-centered cubic structure, with a size of 64.4 nm for the (200) nano-crystallites, according to the X-ray diffraction that was conducted. The zeta potential was found to be −19.5 mV and the dynamic light scattering (DLS) size was 238.8 nm. Methylene blue’s (MB) reaction with NaBH₄ was used in order to measure the catalytic activity of the generated Ag-based NPs over a period of 1 to 5 min. With an astonishing reaction rate of 0.2861 min⁻¹, the MB elimination percentage reached 67% in just 5 min, displaying outstanding catalytic activity. This work can therefore encourage the use of this biowaste for the ecologically benign, cost-effective, and long-term synthesis of innovative Ag-based nanoparticles and nanostructures, as well as in their use as catalysts in the catalytic reduction in MB.