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Abstract By using gauge/gravity duality, we calculate the spectral function of the heavy vector mesons with the presence of an intense magnetic field in a hot and dense medium. The results show that, a general conclusion, as the increases of magnetic field, chemical potential and temperature, the height of the peak of the spectral function decreases and the width increases. A nontrivial result is the change from the peak position of spectral function. We explain this non-trivial behavior by the interplay of the interaction between the two heavy quarks and the interaction between the medium with each of the heavy quarks.