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Genome Wide Identification, Characterization, and Expression Analysis of YABBY-Gene Family in WHEAT (<i>Triticum aestivum</i> L.)
oleh: Zeeshan Ali Buttar, Yuan Yang, Rahat Sharif, Sheng Nan Wu, Yanzhou Xie, Chengshe Wang
Format: | Article |
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Diterbitkan: | MDPI AG 2020-08-01 |
Deskripsi
The small YABBY plant-specific transcription factor has a prominent role in regulating plant growth and developmental activities. However, little information is available about YABBY gene family in <i>Triticum aestivum</i> L. Herein, we identified 21 <i>TaYABBY</i> genes in the Wheat genome database. Then, we performed the conserved motif and domain analysis of <i>TaYABBY</i> proteins. The phylogeny of the <i>TaYABBY</i> was further sub-divided into 6 subfamilies (YABBY1/YABBY3, YABB2, YABBY5, CRC and INO) based on the structural similarities and functional diversities. The GO (Gene ontology) analysis of <i>TaYABBY</i> proteins showed that they are involved in numerous developmental processes and showed response against environmental stresses. The analysis of all identified genes in RNA-seq data showed that they are expressed in different tissues of wheat. Differential expression patterns were observed in not only control samples but also in stressed samples such as biotic stress (i.e., <i>Fusarium graminearum</i> (F.g), <i>septoria tritici</i> (STB), Stripe rust (Sr) and Powdery mildew (Pm), and abiotic stress (i.e., drought, heat, combined drought and heat and phosphorus deficiency), especially at different grain development stages. All identified <i>TaYABBY</i>-genes were localized in the nucleus which implies their participation in the regulatory mechanisms of various biological and cellular processes. In light of the above-mentioned outcomes, it has been deduced that <i>TaYABBY</i>-genes in the wheat genome play an important role in mediating various development, growth, and resistance mechanism, which could provide significant clues for future functional studies.