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Comprehensive Organ-Specific Profiling of Douglas Fir (<i>Pseudotsuga menziesii</i>) Proteome
oleh: Caroline Teyssier, Odile Rogier, Stéphane Claverol, Florian Gautier, Marie-Anne Lelu-Walter, Harold Duruflé
Format: | Article |
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Diterbitkan: | MDPI AG 2023-09-01 |
Deskripsi
The Douglas fir (<i>Pseudotsuga menziesii</i>) is a conifer native to North America that has become increasingly popular in plantations in France due to its many advantages as timber: rapid growth, quality wood, and good adaptation to climate change. Tree genetic improvement programs require knowledge of a species’ genetic structure and history and the development of genetic markers. The very slow progress in this field, for Douglas fir as well as the entire genus <i>Pinus</i>, can be explained using the very large size of their genomes, as well as by the presence of numerous highly repeated sequences. Proteomics, therefore, provides a powerful way to access genomic information of otherwise challenging species. Here, we present the first Douglas fir proteomes acquired using nLC-MS/MS from 12 different plant organs or tissues. We identified 3975 different proteins and quantified 3462 of them, then examined the distribution of specific proteins across plant organs/tissues and their implications in various molecular processes. As the first large proteomic study of a resinous tree species with organ-specific profiling, this short note provides an important foundation for future genomic annotations of conifers and other trees.