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Strainberry: automated strain separation in low-complexity metagenomes using long reads
oleh: Riccardo Vicedomini, Christopher Quince, Aaron E. Darling, Rayan Chikhi
Format: | Article |
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Diterbitkan: | Nature Portfolio 2021-07-01 |
Deskripsi
Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and reconstruct strain genomes from single-sample low-complexity microbiomes.