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We describe Scolopocryptops troglocaudatus sp. n., a new troglobitic scolopocryptopine centipede species. The species was found in a remarkable siliciclastic karst area of Eastern Brazil, in three caves of the Chapada da Diamantina, in the state of Bahia. S. troglocaudatus sp. n. is close to S. miersii Newport, 1845 and S. ferrugineus macrodon (Kraepelin, 1903) but differs from them by troglomorphic features, such as depigmentation, long appendages and a thin cuticle. This new species is the second troglobitic scolopocryptopine described and is the first discovered in Brazil.