A Six-lncRNA Signature for Immunophenotype Prediction of Glioblastoma Multiforme

oleh: Ming Gao, Ming Gao, Ming Gao, Xinzhuang Wang, Xinzhuang Wang, Xinzhuang Wang, Dayong Han, Dayong Han, Dayong Han, Enzhou Lu, Enzhou Lu, Enzhou Lu, Jian Zhang, Cheng Zhang, Ligang Wang, Ligang Wang, Ligang Wang, Quan Yang, Quan Yang, Quan Yang, Qiuyi Jiang, Qiuyi Jiang, Qiuyi Jiang, Jianing Wu, Jianing Wu, Jianing Wu, Xin Chen, Xin Chen, Xin Chen, Shiguang Zhao, Shiguang Zhao, Shiguang Zhao

Format: Article
Diterbitkan: Frontiers Media S.A. 2021-01-01

Deskripsi

Glioblastoma multiforme (GBM) is the most aggressive primary tumor of the central nervous system. As biomedicine advances, the researcher has found the development of GBM is closely related to immunity. In this study, we evaluated the GBM tumor immunoreactivity and defined the Immune-High (IH) and Immune-Low (IL) immunophenotypes using transcriptome data from 144 tumors profiled by The Cancer Genome Atlas (TCGA) project based on the single-sample gene set enrichment analysis (ssGSEA) of five immune expression signatures (IFN-γ response, macrophages, lymphocyte infiltration, TGF-β response, and wound healing). Next, we identified six immunophenotype-related long non-coding RNA biomarkers (im-lncRNAs, USP30-AS1, HCP5, PSMB8-AS1, AL133264.2, LINC01684, and LINC01506) by employing a machine learning computational framework combining minimum redundancy maximum relevance algorithm (mRMR) and random forest model. Moreover, the expression level of identified im-lncRNAs was converted into an im-lncScore using the normalized principal component analysis. The im-lncScore showed a promising performance for distinguishing the GBM immunophenotypes with an area under the curve (AUC) of 0.928. Furthermore, the im-lncRNAs were also closely associated with the levels of tumor immune cell infiltration in GBM. In summary, the im-lncRNA signature had important clinical implications for tumor immunophenotyping and guiding immunotherapy in glioblastoma patients in future.