<i>Rhodoalgimonas zhirmunskyi</i> gen. nov., sp. nov., a Marine Alphaproteobacterium Isolated from the Pacific Red Alga <i>Ahnfeltia tobuchiensis</i>: Phenotypic Characterization and Pan-Genome Analysis

oleh: Olga Nedashkovskaya, Nadezhda Otstavnykh, Larissa Balabanova, Evgenia Bystritskaya, Song-Gun Kim, Natalia Zhukova, Liudmila Tekutyeva, Marina Isaeva

Format: Article
Diterbitkan: MDPI AG 2023-09-01

Deskripsi

A novel Gram-staining negative, strictly aerobic, rod-shaped, and non-motile bacterium, designated strain 10Alg 79<sup>T</sup>, was isolated from the red alga <i>Ahnfeltia tobuchiensis</i>. A phylogenetic analysis based on 16S rRNA gene sequences placed the novel strain within the family <i>Roseobacteraceae</i>, class <i>Alphaproteobacteria</i>, phylum <i>Pseudomonadota</i>, where the nearest neighbor was <i>Shimia sediminis</i> ZQ172<sup>T</sup> (97.33% of identity). However, a phylogenomic study clearly showed that strain 10Alg 79<sup>T</sup> forms a distinct evolutionary lineage at the genus level within the family <i>Roseobacteraceae</i> combining with strains <i>Aquicoccus porphyridii</i> L1 8-17<sup>T</sup>, <i>Marimonas arenosa</i> KCTC 52189<sup>T</sup>, and <i>Lentibacter algarum</i> DSM 24677<sup>T</sup>. The ANI, AAI, and dDDH values between them were 75.63–78.15%, 67.41–73.08%, and 18.8–19.8%, respectively. The genome comprises 3,754,741 bp with a DNA GC content of 62.1 mol%. The prevalent fatty acids of strain 10Alg 79<sup>T</sup> were C<sub>18:1 ω7c</sub> and C<sub>16:0</sub>. The polar lipid profile consisted of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, an unidentified aminolipid, an unidentified phospholipid and an unidentified lipid. A pan-genome analysis showed that the unique part of the 10Alg 79<sup>T</sup> genome consists of 13 genus-specific clusters and 413 singletons. The annotated singletons were more often related to transport protein systems, transcriptional regulators, and enzymes. A functional annotation of the draft genome sequence revealed that this bacterium could be a source of a new phosphorylase, which may be used for phosphoglycoside synthesis. A combination of the genotypic and phenotypic data showed that the bacterial isolate represents a novel species and a novel genus, for which the name <i>Rhodoalgimonas zhirmunskyi</i> gen. nov., sp. nov. is proposed. The type strain is 10Alg 79<sup>T</sup> (=KCTC 72611<sup>T</sup> = KMM 6723<sup>T</sup>).