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<i>Notonecta triguttata</i> Motschulsky, 1861 (Hemiptera, Notonectidae) is distributed in China, Japan, and South Korea. It is the dominant hexapod predator in aquatic ecosystems and can control harmful insects, such as mosquitoes and parasites. This study presents the first determination of the complete mitochondrial genome of <i>N. triguttata</i>. The mitogenome was 15,156 base pairs in length and was made up of 13 protein-coding genes (PCGs), 2 ribosomal RNAs, 22 transfer RNAs, and one non-coding control region. All genes were arranged in the same order as most other known heteropteran mitogenomes. All PCGs started with the ATN codon except <i>COX1</i> (TTG) and <i>NAD2</i> (GTG) and ended with TAA, TAG, or the partial stop codon T. The tRNAs had a typical cloverleaf secondary structure, except tRNA-Ser (GCT). The A + T content (75.96%) was relatively high across the entire mitogenome. The optimal phylogenetic trees were inferred through the Bayesian inference and maximum likelihood methods. The trees suggested a topology of (Corixoidea + ((Nepoidea + Ochteroidea) + (Naucoroidea + (Pleoidea + Notonectoidea)))) and identified that <i>N. triguttata</i> belongs to Notonectoidea. The complete mitogenome of <i>N. triguttata</i> provides a potentially useful resource for further exploration of the taxonomic status and phylogenetic history of the <i>Notonecta</i> species.