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Microplastics can adsorb and spread a variety of pollutants in the ecosystem posing a threat to human health. One of the common pollution sources of environmental waters is metal ions, which not only adsorb on microplastics but can also promote the adsorption of other invasive species such as environmental DNA. Recently, we showed that environmentally abundant metal ions (Na⁺, Mg²⁺ and Ca²⁺) can promote the adsorption of single-stranded DNA (ssDNA) onto microplastics. Herein, we investigated the effect of transition metal ions including Zn²⁺ and Mn²⁺ and compared them with Mg²⁺ for promoting DNA adsorption. To better mimic environmental DNA, we also used a salmon sperm double-stranded DNA (dsDNA) (~2000 bp). For both ssDNA and dsDNA, the transition metals induced a higher adsorption capacity compared to Mg²⁺, and that correlated with the higher binding affinity of transition metals to DNA. Although metal-mediated interactions were vital for ssDNA adsorption, the dsDNA adsorbed on the microplastics even in the absence of metal ions, likely due to the abundance of binding sites of the 100-times longer dsDNA. Finally, desorption studies revealed that hydrophobic interactions were responsible for dsDNA adsorption in the absence of metal ions.