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Membrane surface fouling has always been a critical issue for the long-term operation of polymeric membranes. Therefore, it is crucial to develop new approaches to prevent fouling. While developing new approaches, characterization methods are greatly important for understanding the distribution of fouling on the membrane surface. In this work, a cellulose acetate membrane was fouled by the filtration of artificial wastewater based on alginate. The surfaces of fouled membranes were characterized through scanning electron microscopy (SEM), confocal laser scanning microscopy (CLSM), atomic force microscopy (AFM), and white light interferometry (WLI). The results were then compared in terms of the resolution, accuracy, feasibility, and cost-efficiency.