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Abstract We investigate constraints on Lorentz invariance violation in the neutrino sector from a joint analysis of big bang nucleosynthesis and the cosmic microwave background. The effect of Lorentz invariance violation during the epoch of big bang nucleosynthesis changes the predicted helium-4 abundance, which influences the power spectrum of the cosmic microwave background at the recombination epoch. In combination with the latest measurement of the primordial helium-4 abundance, the Planck 2015 data of the cosmic microwave background anisotropies give a strong constraint on the deformation parameter since adding the primordial helium measurement breaks the degeneracy between the deformation parameter and the physical dark matter density.