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<p>We conducted repetitive observations in Funka Bay, Hokkaido, Japan, on 15 February, 4 and 15 March, and 14 April 2019. The diatom spring bloom peaked on 4 March and started declining on 15 March. Funka Bay winter water remained below 30 m depth, which was below the surface mixed-layer and dark-layer depth (0.1 % of the surface photosynthetically active radiation, PAR, depth) on 4 and 15 March. In the subsurface layer at depths of 30–50 m, concentrations of NO<span class="inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML" id="M1" display="inline" overflow="scroll" dspmath="mathml"><mrow><msubsup><mi/><mn mathvariant="normal">3</mn><mo>-</mo></msubsup></mrow></math><span><svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="9pt" height="16pt" class="svg-formula" dspmath="mathimg" md5hash="5c4cefaf8b78d41c1ce2f2ef151f712f"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="bg-20-421-2023-ie00001.svg" width="9pt" height="16pt" src="bg-20-421-2023-ie00001.png"/></svg:svg></span></span>, PO<span class="inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML" id="M2" display="inline" overflow="scroll" dspmath="mathml"><mrow><msubsup><mi/><mn mathvariant="normal">4</mn><mrow><mn mathvariant="normal">3</mn><mo>-</mo></mrow></msubsup></mrow></math><span><svg:svg xmlns:svg="http://www.w3.org/2000/svg" width="13pt" height="17pt" class="svg-formula" dspmath="mathimg" md5hash="2a55aaddcd6f6e19827895ad406d0cde"><svg:image xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="bg-20-421-2023-ie00002.svg" width="13pt" height="17pt" src="bg-20-421-2023-ie00002.png"/></svg:svg></span></span>, and Si(OH)<span class="inline-formula">₄</span> decreased by half between these dates, even in the dark. Incubation experiments using the diatom <i>Thalassiosira nordenskioeldii</i> showed that this diatom could consume added nutrients in the dark at substantial rates after pre-culturing to deplete nutrients. Incubation experiments using natural seawater collected in the growing phase of the bloom on 8 March 2022 also showed that nutrient-depleted phytoplankton could consume added nutrients in the dark. We excluded three physical process – water mixing, diffusive transport, and subduction – as possible main reasons for the decrease in nutrients in the subsurface layer. We conclude that the nutrient reduction in the subsurface layer (30–50 m) between 4 and 15 March 2019 could be explained by nutrient consumption by diatoms in the dark in that layer.</p>