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Transcriptome-Based Identification, Characterization, Evolutionary Analysis, and Expression Pattern Analysis of the <i>WRKY</i> Gene Family and Salt Stress Response in <i>Panax ginseng</i>
oleh: Tao Liu, En Yu, Lihe Hou, Panpan Hua, Mingzhu Zhao, Yanfang Wang, Jian Hu, Meiping Zhang, Kangyu Wang, Yi Wang
Format: | Article |
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Diterbitkan: | MDPI AG 2022-08-01 |
Deskripsi
WRKY transcription factors are some of the most important transcription factors in planta, and they are involved in biological and abiotic stresses, growth and development, and biochemical processes. The <i>WRKY</i> gene family has been found in many higher plants, while little is known about WRKY-encoding genes in ginseng. As a traditional and important economic medicinal herb and health food, ginseng has been a model species for other related medicinal plants. Here, we analyze the WRKY transcript factor gene family in ginseng from a genetics and genomics perspective in the hope that this study can create a new avenue for understanding the role of <i>PgWRKYs</i>. By identifying and analyzing all candidate WRKY transcription factor family members based on the transcriptome of ginseng, a total of 118 <i>PgWRKY</i> genes was obtained following gene classification, the phylogenetic relationship, conserved domain structure, functional differentiation, and an expression activity analysis. A phylogenetic analysis revealed that the <i>PgWRKYs</i> were clustered into three groups: I, II, and III transcription factors. Members in group Ⅱ were further divided into five sub-groups: Ⅱa to Ⅱe. An expression analysis showed a trend of co-expression among most <i>PgWRKY</i> genes, forming an interaction network. The coding sequences were WRKYGQK; only two genes were WRKYGKK, and only one gene was WSKYGQK. Moreover, a salt stress treatment analysis of the response of <i>PgWRKY39-01</i>, <i>PgWRKY062</i>, and <i>PgWRKY064</i> genes was investigated using RT-qPCR. After salt stress treatment, the expression of three <i>PgWRKY</i> genes was increased, indicating that <i>PgWRKY</i>s can participate in regulating the response to salt stresses in ginseng. These comprehensive data provide a reference for elucidating the functions of this transcription factor family in the growth, development, and salt stress response of ginseng.