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Systematic Analysis of DNA Demethylase Gene Families in Foxtail Millet (<i>Setaria italica</i> L.) and Their Expression Variations after Abiotic Stresses
oleh: Yingying Sun, Xin Wang, Yunfei Di, Jinxiu Li, Keyu Li, Huanhuan Wei, Fan Zhang, Zhenxia Su
| Format: | Article |
|---|---|
| Diterbitkan: | MDPI AG 2024-04-01 |
Deskripsi
DNA methylation is a highly conserved epigenetic modification involved in many biological processes, including growth and development, stress response, and secondary metabolism. DNA demethylase (DNA-deMTase) genes have been identified in some plant species; however, there are no reports on the identification and analysis of DNA-deMTase genes in Foxtail millet (<i>Setaria italica</i> L.). In this study, seven DNA-deMTases were identified in <i>S. italica</i>. These DNA-deMTase genes were divided into four subfamilies (<i>DML5</i>, <i>DML4</i>, <i>DML3</i>, and <i>ROS1</i>) by phylogenetic and gene structure analysis. Further analysis shows that the physical and chemical properties of these DNA-deMTases proteins are similar, contain the typical conserved domains of ENCO3c and are located in the nucleus. Furthermore, multiple cis-acting elements were observed in DNA-deMTases, including light responsiveness, phytohormone responsiveness, stress responsiveness, and elements related to plant growth and development. The DNA-deMTase genes are expressed in all tissues detected with certain tissue specificity. Then, we investigated the abundance of DNA-deMTase transcripts under abiotic stresses (cold, drought, salt, ABA, and MeJA). The results showed that different genes of DNA-deMTases were involved in the regulation of different abiotic stresses. In total, our findings will provide a basis for the roles of DNA-deMTase in response to abiotic stress.