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Abstract In this paper, complexity factor is used with generalized polytropic equation of state to develop two consistent systems of three differential equations and a general frame work is established for modify form of Lane-Emden equations. For this purpose anisotropic fluid distribution is considered in cylindrical static symmetry with two cases of generalized polytropic equation of state (i) mass density $$\mu _{o}$$ μ o and (ii) energy density $$\mu $$ μ . A graphical analysis will be carried out for the numerical solution of these systems of three differential equations.