Construction of Infectious cDNA Clone of Brassica Yellows Virus Isolated from Strawberry and Establishment of TaqMan RT-qPCR

oleh: Xiaoli Zhao, Chengyong He, Dehang Gao, Tengfei Xu, Xiaofeng Li, Junjie Liu, Shifang Li, Hongqing Wang

Format: Article
Diterbitkan: MDPI AG 2022-12-01

Deskripsi

The natural host range for brassica yellows virus (BrYV) is generally limited to Cruciferae. However, we found that BrYV can naturally infect strawberry. The full-length genome sequences of BrYV-MB (accession No. MZ666129) and BrYV-HY (accession No. ON060762) identified in strawberry from Yantai and Beijing, China, were obtained by high-throughput sequencing (HTS) combined with the RT-PCR and RACE techniques. The complete genome sequences of BrYV-MB and BrYV-HY are 5666 nt and contain six open reading frames (ORFs). The two isolates have the highest nucleotide (nt) sequence identity of 99.0%. The infectious cDNA clone of BrYV-HY was constructed through homologous recombination and used to agroinfiltrate <i>Nicotiana benthamiana</i> and <i>Arabidopsis thaliana</i>. The inoculated leaves of <i>N. benthamiana</i> showed necrotic symptoms after 4 days of inoculation (dpi), and the systematic leaves of <i>A</i>. <i>thaliana</i> exhibited purple symptoms at 14 dpi. To develop a rapid and high-sensitive method for the detection of BrYV, a TaqMan real-time fluorescence quantitative RT-PCR method (TaqMan RT-qPCR) was established. Under optimum reaction conditions, the sensitivity of the detection was as low as 100 fg and approximately 100-fold more sensitive than the conventional RT-PCR, so it can be used in large-scale testing.