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FixNCut: A Practical Guide to Sample Preservation by Reversible Fixation for Single Cell Assays
oleh: Shuoshuo Wang, Laura Jiménez-Gracia, Antonella Arruda de Amaral, Ioannis Vlachos, Jasmine Plummer, Holger Heyn, Luciano Martelotto
| Format: | Article |
|---|---|
| Diterbitkan: | Bio-protocol LLC 2024-09-01 |
Deskripsi
The quality of standard single-cell experiments often depends on the immediate processing of cells or tissues post-harvest to preserve fragile and vulnerable cell populations, unless the samples are adequately fixed and stored. Despite the recent rise in popularity of probe-based and aldehyde-fixed RNA assays, these methods face limitations in species and target availability and are not suitable for immunoprofiling or assessing chromatin accessibility. Recently, a reversible fixation strategy known as FixNCut has been successfully deployed to separate sampling from downstream applications in a reproducible and robust manner, avoiding stress or necrosis-related artifacts. In this article, we present an optimized and robust practical guide to the FixNCut protocol to aid the end-to-end adaptation of this versatile method. This protocol not only decouples tissue or cell harvesting from single-cell assays but also enables a flexible and decentralized workflow that unlocks the potential for single-cell analysis as well as unconventional study designs that were previously considered unfeasible.