Genomic Analyses of <i>Globodera pallida</i>, A Quarantine Agricultural Pathogen in Idaho

oleh: Sulochana K. Wasala, Dana K. Howe, Louise-Marie Dandurand, Inga A. Zasada, Dee R. Denver

Format: Article
Diterbitkan: MDPI AG 2021-03-01

Deskripsi

<i>Globodera pallida</i> is among the most significant plant-parasitic nematodes worldwide, causing major damage to potato production. Since it was discovered in Idaho in 2006, eradication efforts have aimed to contain and eradicate <i>G. pallida</i> through phytosanitary action and soil fumigation. In this study, we investigated genome-wide patterns of <i>G. pallida</i> genetic variation across Idaho fields to evaluate whether the infestation resulted from a single or multiple introduction(s) and to investigate potential evolutionary responses since the time of infestation. A total of 53 <i>G. pallida</i> samples (~1,042,000 individuals) were collected and analyzed, representing five different fields in Idaho, a greenhouse population, and a field in Scotland that was used for external comparison. According to genome-wide allele frequency and fixation index (<i>F<sub>st</sub></i>) analyses, most of the genetic variation was shared among the <i>G. pallida</i> populations in Idaho fields pre-fumigation, indicating that the infestation likely resulted from a single introduction. Temporal patterns of genome-wide polymorphisms involving (1) pre-fumigation field samples collected in 2007 and 2014 and (2) pre- and post-fumigation samples revealed nucleotide variants (SNPs, single-nucleotide polymorphisms) with significantly differentiated allele frequencies indicating genetic differentiation. This study provides insights into the genetic origins and adaptive potential of <i>G. pallida</i> invading new environments.