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Similar pathogen targets in Arabidopsis thaliana and homo sapiens protein networks.
oleh: Paulo Shakarian, J Kenneth Wickiser
Format: | Article |
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Diterbitkan: | Public Library of Science (PLoS) 2012-01-01 |
Deskripsi
We study the behavior of pathogens on host protein networks for humans and Arabidopsis - noting striking similarities. Specifically, we preform [Formula: see text]-shell decomposition analysis on these networks - which groups the proteins into various "shells" based on network structure. We observe that shells with a higher average degree are more highly targeted (with a power-law relationship) and that highly targeted nodes lie in shells closer to the inner-core of the network. Additionally, we also note that the inner core of the network is significantly under-targeted. We show that these core proteins may have a role in intra-cellular communication and hypothesize that they are less attacked to ensure survival of the host. This may explain why certain high-degree proteins are not significantly attacked.