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In present article, I introduced some network matrix based methods for comparing and testing between-network difference/similarity, including the methods for interval weights based network matrix, including between-network similarity, randomization test of between-network difference, and statistic test of between-network difference, and the method for Boolean weights based network matrix. In addition, degree change index, weight change index, and eigenvector matrix change index were presented also. Matlab codes of the methods were provided.