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As a new assistant navigation technology using geophysical field for navigation, geomagnetic matching navigation can effectively alleviate the problems such as the unavailability of satellite and the easy divergence of position data of inertial navigation system in the process of navigation. It can also carry out real-time assistant navigation with high concealment, all-around area and all-weather. According to the principle of geomagnetic matching and the geomagnetic affine model, considering that the basic particle swarm optimization algorithm is easy to fall into local extremum, this paper introduces particle swarm optimization geomagnetic matching algorithm based on simulated annealing(SAPSO) for limitations of traditional matching algorithm. What's more, the SAPSO is improved from three parts: constraints, parameters and function of fitness. Finally, the simulation analysis is carried out from five aspects to verify the effectiveness and accuracy of the improved SAPSO.