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With increased breeding density, the phenomenon of hypoxia gradually increases in aquaculture. Hypoxia is primarily mediated by the hypoxia-inducible factor 1 (HIF-1) signaling pathway. Prolyl hydroxylase domain proteins (PHD) are cellular oxygen-sensing molecules that regulate the stability of HIF-1α through hydroxylation. In this study, the characterization of the PHD2 from mandarin fish <i>Siniperca chuatsi</i> (<i>sc</i>PHD2) and its roles in the HIF-1 signaling pathway were investigated. Bioinformation analysis showed that <i>sc</i>PHD2 had the conserved prolyl 4-hydroxylase alpha subunit homolog domains at its C-terminal and was more closely related to other Perciformes PHD2 than other PHD2. Tissue-distribution results revealed that <i>scphd2</i> gene was expressed in all tissues tested and more highly expressed in blood and liver than in other tested tissues. Dual-luciferase reporter gene and RT-qPCR assays showed that <i>sc</i>PHD2 overexpression could significantly inhibit the HIF-1 signaling pathway. Co-immunoprecipitation analysis showed that <i>sc</i>PHD2 could interact with <i>sc</i>HIF-1α. Protein degradation experiment results suggested that <i>sc</i>PHD2 could promote <i>sc</i>HIF-1α degradation through the proteasome degradation pathway. This study advances our understanding of how the HIF-1 signaling pathway is regulated by <i>sc</i>PHD2 and will help in understanding the molecular mechanisms underlying hypoxia adaptation in teleost fish.