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Radiation Damage on Thaumatin: A Case Study of Crystals That Are Larger Than the Microfocusing X-ray Beam
oleh: Ki Hyun Nam
Format: | Article |
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Diterbitkan: | MDPI AG 2023-01-01 |
Deskripsi
Microfocusing X-rays direct high-density photons on crystal samples and can enhance the diffraction limit and quality of collected data. However, these intense X-rays can cause radiation damage to the sample, which often results in undesirable structural information. Accordingly, a data collection strategy that minimizes radiation damage is critical to obtaining accurate structural information. In this study, radiation damage in single-point data collection was investigated at two different X-ray exposure times (1 s and 100 ms) using microfocusing X-rays and a thaumatin crystal larger than the beam. The data collection statistics showed that the diffraction intensity of the Bragg peak did not gradually decrease until the crystal rotation reached 180°, and it significantly decreased after exceeding this value. Thaumatin structures exposed to X-rays for 1 s (Thaumatin<sup>1s</sup>) and 100 ms (Thaumatin<sup>100ms</sup>) were determined at 1.13 Å resolution. The temperature factors for Asp60, Arg119, Lys163, and Lys187 of thaumatin were increased by radiation damage. Specific radiation damage was observed at the disulfide bond in Thaumatin<sup>1s</sup> but was negligible in Thaumatin<sup>100ms</sup>. Splitting and reprocessing Thaumatin<sup>100ms</sup> showed that electron density maps with minimal radiation damage can be obtained when using minimal data that satisfy the completeness, I/sigma, and CC1/2 parameters. These results expand our understanding of radiation damage phenomena in macromolecules and can be used for data collection applications.