Hasil Pencarian - Yoseph Barash

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  1. 1
    Integrative analysis reveals RNA G-quadruplexes in UTRs are selectively constrained and enriched for functional associations

    Integrative analysis reveals RNA G-quadruplexes in UTRs are selectively constrained and enriched for functional associations oleh David S. M. Lee, Louis R. Ghanem, Yoseph Barash

    Diterbitkan 2020-01-01
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  2. 2
    Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study

    Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study oleh Anupama Jha, Joseph K. Aicher, Matthew R. Gazzara, Deependra Singh, Yoseph Barash

    Diterbitkan 2020-06-01
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  3. 3
    Identifying common transcriptome signatures of cancer by interpreting deep learning models

    Identifying common transcriptome signatures of cancer by interpreting deep learning models oleh Anupama Jha, Mathieu Quesnel-Vallières, David Wang, Andrei Thomas-Tikhonenko, Kristen W Lynch, Yoseph Barash

    Diterbitkan 2022-05-01
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  4. 4
    A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers

    A Bayesian model for unsupervised detection of RNA splicing based subtypes in cancers oleh David Wang, Mathieu Quesnel-Vallieres, San Jewell, Moein Elzubeir, Kristen Lynch, Andrei Thomas-Tikhonenko, Yoseph Barash

    Diterbitkan 2023-01-01
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  5. 5
    Disrupting upstream translation in mRNAs is associated with human disease

    Disrupting upstream translation in mRNAs is associated with human disease oleh David S. M. Lee, Joseph Park, Andrew Kromer, Aris Baras, Daniel J. Rader, Marylyn D. Ritchie, Louis R. Ghanem, Yoseph Barash

    Diterbitkan 2021-03-01
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  6. 6
    A new view of transcriptome complexity and regulation through the lens of local splicing variations

    A new view of transcriptome complexity and regulation through the lens of local splicing variations oleh Jorge Vaquero-Garcia, Alejandro Barrera, Matthew R Gazzara, Juan González-Vallinas, Nicholas F Lahens, John B Hogenesch, Kristen W Lynch, Yoseph Barash

    Diterbitkan 2016-02-01
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  7. 7
    Transcriptome analysis of hypoxic cancer cells uncovers intron retention in EIF2B5 as a mechanism to inhibit translation.

    Transcriptome analysis of hypoxic cancer cells uncovers intron retention in EIF2B5 as a mechanism to inhibit translation. oleh Lauren K Brady, Hejia Wang, Caleb M Radens, Yue Bi, Milan Radovich, Amit Maity, Cristina Ivan, Mircea Ivan, Yoseph Barash, Constantinos Koumenis

    Diterbitkan 2017-09-01
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  8. 8
    MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis

    MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis oleh Barry Slaff, Caleb M. Radens, Paul Jewell, Anupama Jha, Nicholas F. Lahens, Gregory R. Grant, Andrei Thomas-Tikhonenko, Kristen W. Lynch, Yoseph Barash

    Diterbitkan 2021-06-01
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  9. 9
    RNA splicing analysis using heterogeneous and large RNA-seq datasets

    RNA splicing analysis using heterogeneous and large RNA-seq datasets oleh Jorge Vaquero-Garcia, Joseph K. Aicher, San Jewell, Matthew R. Gazzara, Caleb M. Radens, Anupama Jha, Scott S. Norton, Nicholas F. Lahens, Gregory R. Grant, Yoseph Barash

    Diterbitkan 2023-03-01
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  10. 10
    CAMPAREE: a robust and configurable RNA expression simulator

    CAMPAREE: a robust and configurable RNA expression simulator oleh Nicholas F. Lahens, Thomas G. Brooks, Dimitra Sarantopoulou, Soumyashant Nayak, Cris Lawrence, Antonijo Mrčela, Anand Srinivasan, Jonathan Schug, John B. Hogenesch, Yoseph Barash, Gregory R. Grant

    Diterbitkan 2021-09-01
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  11. 11
    Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts

    Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts oleh Laura Schulz, Manuel Torres-Diz, Mariela Cortés-López, Katharina E. Hayer, Mukta Asnani, Sarah K. Tasian, Yoseph Barash, Elena Sotillo, Kathi Zarnack, Julian König, Andrei Thomas-Tikhonenko

    Diterbitkan 2021-06-01
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  12. 12
    The global Protein-RNA interaction map of ESRP1 defines a post-transcriptional program that is essential for epithelial cell function

    The global Protein-RNA interaction map of ESRP1 defines a post-transcriptional program that is essential for epithelial cell function oleh Natoya J. Peart, Jae Yeon Hwang, Mathieu Quesnel-Vallières, Matthew J. Sears, Yuequin Yang, Peter Stoilov, Yoseph Barash, Juw Won Park, Kristen W. Lynch, Russ P. Carstens

    Diterbitkan 2022-10-01
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  13. 13
    The Tumor Suppressor <i>Adenomatous Polyposis Coli (apc)</i> Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish

    The Tumor Suppressor <i>Adenomatous Polyposis Coli (apc)</i> Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish oleh Xiaolei Liu, William D. Jones, Mathieu Quesnel-Vallières, Sudhish A. Devadiga, Kristin Lorent, Alexander J. Valvezan, Rebecca L. Myers, Ning Li, Christopher J. Lengner, Yoseph Barash, Michael Pack, Peter S. Klein

    Diterbitkan 2023-06-01
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  14. 14
    An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning

    An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning oleh Ingrid Ehrmann, James H Crichton, Matthew R Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaž Curk, Dirk de Rooij, Jannetta S Steyn, Simon Cockell, Ian R Adams, Yoseph Barash, David J Elliott

    Diterbitkan 2019-01-01
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  15. 15
    The germ cell-specific RNA binding protein RBM46 is essential for spermatogonial differentiation in mice.

    The germ cell-specific RNA binding protein RBM46 is essential for spermatogonial differentiation in mice. oleh Natoya J Peart, Taylor A Johnson, Sungkyoung Lee, Matthew J Sears, Fang Yang, Mathieu Quesnel-Vallières, Huijuan Feng, Yocelyn Recinos, Yoseph Barash, Chaolin Zhang, Brian P Hermann, P Jeremy Wang, Christopher B Geyer, Russ P Carstens

    Diterbitkan 2022-09-01
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  16. 16
    An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression

    An anciently diverged family of RNA binding proteins maintain correct splicing of a class of ultra-long exons through cryptic splice site repression oleh Chileleko Siachisumo, Sara Luzzi, Saad Aldalaqan, Gerald Hysenaj, Caroline Dalgliesh, Kathleen Cheung, Matthew R Gazzara, Ivaylo D Yonchev, Katherine James, Mahsa Kheirollahi Chadegani, Ingrid E Ehrmann, Graham R Smith, Simon J Cockell, Jennifer Munkley, Stuart A Wilson, Yoseph Barash, David J Elliott

    Diterbitkan 2024-10-01
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  17. 17
    High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

    High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance oleh Mariela Cortés-López, Laura Schulz, Mihaela Enculescu, Claudia Paret, Bea Spiekermann, Mathieu Quesnel-Vallières, Manuel Torres-Diz, Sebastian Unic, Anke Busch, Anna Orekhova, Monika Kuban, Mikhail Mesitov, Miriam M. Mulorz, Rawan Shraim, Fridolin Kielisch, Jörg Faber, Yoseph Barash, Andrei Thomas-Tikhonenko, Kathi Zarnack, Stefan Legewie, Julian König

    Diterbitkan 2022-09-01
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  18. 18
    Genomic profiling of human vascular cells identifies TWIST1 as a causal gene for common vascular diseases.

    Genomic profiling of human vascular cells identifies TWIST1 as a causal gene for common vascular diseases. oleh Sylvia T Nurnberg, Marie A Guerraty, Robert C Wirka, H Shanker Rao, Milos Pjanic, Scott Norton, Felipe Serrano, Ljubica Perisic, Susannah Elwyn, John Pluta, Wei Zhao, Stephanie Testa, YoSon Park, Trieu Nguyen, Yi-An Ko, Ting Wang, Ulf Hedin, Sanjay Sinha, Yoseph Barash, Christopher D Brown, Thomas Quertermous, Daniel J Rader

    Diterbitkan 2020-01-01
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  19. 19
    A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior

    A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior oleh Ingrid Ehrmann, Matthew R. Gazzara, Vittoria Pagliarini, Caroline Dalgliesh, Mahsa Kheirollahi-Chadegani, Yaobo Xu, Eleonora Cesari, Marina Danilenko, Marie Maclennan, Kate Lowdon, Tanja Vogel, Piia Keskivali-Bond, Sara Wells, Heather Cater, Philippe Fort, Mauro Santibanez-Koref, Silvia Middei, Claudio Sette, Gavin J. Clowry, Yoseph Barash, Mark O. Cunningham, David J. Elliott

    Diterbitkan 2016-12-01
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  20. 20
    CYP11B1 variants influence skeletal maturation via alternative splicing

    CYP11B1 variants influence skeletal maturation via alternative splicing oleh Olja Grgic, Matthew R. Gazzara, Alessandra Chesi, Carolina Medina-Gomez, Diana L. Cousminer, Jonathan A. Mitchell, Vid Prijatelj, Jard de Vries, Enisa Shevroja, Shana E. McCormack, Heidi J. Kalkwarf, Joan M. Lappe, Vicente Gilsanz, Sharon E. Oberfield, John A. Shepherd, Andrea Kelly, Soroosh Mahboubi, Fabio R. Faucz, Richard A. Feelders, Frank H. de Jong, Andre G. Uitterlinden, Jenny A. Visser, Louis R. Ghanem, Eppo B. Wolvius, Leo J. Hofland, Constantine A. Stratakis, Babette S. Zemel, Yoseph Barash, Struan F. A. Grant, Fernando Rivadeneira

    Diterbitkan 2021-11-01
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