Hasil Pencarian - X. Shirley Liu

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  1. 1
    Getting started in tiling microarray analysis.

    Getting started in tiling microarray analysis. oleh X Shirley Liu

    Diterbitkan 2007-10-01
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  2. 2
    Revisit linear regression-based deconvolution methods for tumor gene expression data

    Revisit linear regression-based deconvolution methods for tumor gene expression data oleh Bo Li, Jun S. Liu, X. Shirley Liu

    Diterbitkan 2017-07-01
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  3. 3
    Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model.

    Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model. oleh Naiqian Zhang, Haiyun Wang, Yun Fang, Jun Wang, Xiaoqi Zheng, X Shirley Liu

    Diterbitkan 2015-01-01
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  4. 4
    Large-scale public data reuse to model immunotherapy response and resistance

    Large-scale public data reuse to model immunotherapy response and resistance oleh Jingxin Fu, Karen Li, Wubing Zhang, Changxin Wan, Jing Zhang, Peng Jiang, X. Shirley Liu

    Diterbitkan 2020-02-01
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  5. 5
    Robust identification of perturbed cell types in single-cell RNA-seq data

    Robust identification of perturbed cell types in single-cell RNA-seq data oleh Phillip B. Nicol, Danielle Paulson, Gege Qian, X. Shirley Liu, Rafael Irizarry, Avinash D. Sahu

    Diterbitkan 2024-09-01
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  6. 6
    CRISPR-FOCUS: A web server for designing focused CRISPR screening experiments.

    CRISPR-FOCUS: A web server for designing focused CRISPR screening experiments. oleh Qingyi Cao, Jian Ma, Chen-Hao Chen, Han Xu, Zhi Chen, Wei Li, X Shirley Liu

    Diterbitkan 2017-01-01
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  7. 7
    Genetic fusions favor tumorigenesis through degron loss in oncogenes

    Genetic fusions favor tumorigenesis through degron loss in oncogenes oleh Jing Liu, Collin Tokheim, Jonathan D. Lee, Wenjian Gan, Brian J. North, X. Shirley Liu, Pier Paolo Pandolfi, Wenyi Wei

    Diterbitkan 2021-11-01
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  8. 8
    Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

    Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data oleh Qian Qin, Jingyu Fan, Rongbin Zheng, Changxin Wan, Shenglin Mei, Qiu Wu, Hanfei Sun, Myles Brown, Jing Zhang, Clifford A. Meyer, X. Shirley Liu

    Diterbitkan 2020-02-01
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  9. 9
    Determinants of transcription factor regulatory range

    Determinants of transcription factor regulatory range oleh Chen-Hao Chen, Rongbin Zheng, Collin Tokheim, Xin Dong, Jingyu Fan, Changxin Wan, Qin Tang, Myles Brown, Jun S. Liu, Clifford A. Meyer, X. Shirley Liu

    Diterbitkan 2020-05-01
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  10. 10
    Fast alignment and preprocessing of chromatin profiles with Chromap

    Fast alignment and preprocessing of chromatin profiles with Chromap oleh Haowen Zhang, Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer, Tao Liu, Ming Tang, Srinivas Aluru, Feng Yue, X. Shirley Liu, Heng Li

    Diterbitkan 2021-11-01
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  11. 11
    Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

    Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer oleh Zhou Du, Tong Sun, Ezgi Hacisuleyman, Teng Fei, Xiaodong Wang, Myles Brown, John L. Rinn, Mary Gwo-Shu Lee, Yiwen Chen, Philip W. Kantoff, X. Shirley Liu

    Diterbitkan 2016-03-01
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  12. 12
    505 IGSF8 is a novel innate immune checkpoint and cancer immunotherapy target

    505 IGSF8 is a novel innate immune checkpoint and cancer immunotherapy target oleh Bin Xie, Yulong Li, Karim A Benhadji, X Shirley Liu, Xiangyang Wu, Hailing Liu, Xi Xiao, Huizhu Liu, Qingyang Ding, Caibin Sheng, Rongbin Zheng, Quan Yu, Xihao Hu, Tengfei Xiao

    Diterbitkan 2023-11-01
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  13. 13
    Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation

    Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation oleh Wubing Zhang, Shourya S. Roy Burman, Jiaye Chen, Katherine A. Donovan, Yang Cao, Chelsea Shu, Boning Zhang, Zexian Zeng, Shengqing Gu, Yi Zhang, Dian Li, Eric S. Fischer, Collin Tokheim, X. Shirley Liu

    Diterbitkan 2022-10-01
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  14. 14
    High-dimensional genomic data bias correction and data integration using MANCIE

    High-dimensional genomic data bias correction and data integration using MANCIE oleh Chongzhi Zang, Tao Wang, Ke Deng, Bo Li, Sheng’en Hu, Qian Qin, Tengfei Xiao, Shihua Zhang, Clifford A. Meyer, Housheng Hansen He, Myles Brown, Jun S. Liu, Yang Xie, X. Shirley Liu

    Diterbitkan 2016-04-01
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  15. 15
    VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis

    VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis oleh MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes Köster, Bo Li, Hanfei Sun, Taiwen Li, Jian Zhang, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, X. Shirley Liu, Henry W. Long

    Diterbitkan 2018-04-01
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  16. 16
    MetaTiME integrates single-cell gene expression to characterize the meta-components of the tumor immune microenvironment

    MetaTiME integrates single-cell gene expression to characterize the meta-components of the tumor immune microenvironment oleh Yi Zhang, Guanjue Xiang, Alva Yijia Jiang, Allen Lynch, Zexian Zeng, Chenfei Wang, Wubing Zhang, Jingyu Fan, Jiajinlong Kang, Shengqing Stan Gu, Changxin Wan, Boning Zhang, X. Shirley Liu, Myles Brown, Clifford A. Meyer

    Diterbitkan 2023-05-01
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  17. 17
    Integrative analyses of single-cell transcriptome and regulome using MAESTRO

    Integrative analyses of single-cell transcriptome and regulome using MAESTRO oleh Chenfei Wang, Dongqing Sun, Xin Huang, Changxin Wan, Ziyi Li, Ya Han, Qian Qin, Jingyu Fan, Xintao Qiu, Yingtian Xie, Clifford A. Meyer, Myles Brown, Ming Tang, Henry Long, Tao Liu, X. Shirley Liu

    Diterbitkan 2020-08-01
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  18. 18
    T028: Single-cell RNA sequencing reveals the interplay between circulating CD4 T cells, B cells and cancer-associated monocytes in classic Hodgkin lymphoma treated with PD-1 blockade

    T028: Single-cell RNA sequencing reveals the interplay between circulating CD4 T cells, B cells and cancer-associated monocytes in classic Hodgkin lymphoma treated with PD-1 blocka... oleh Julia Paczkowska, Ming Tang, Kyle T. Wright, Li Song, Vignesh Shanmugam, Kelsey Luu, Emma L. Welsh, Fathima Zumla Cader, Elisa Mandato, Jing Ouyang, Gali Bai, Lee Lawton, Scott Rodig, X Shirley Liu, Margaret A. Shipp

    Diterbitkan 2022-10-01
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  19. 19
    S125: NON-GENETIC RESISTANCE TO MENIN INHIBITION IN AML IS REVERSIBLE BY PERTURBATION OF KAT6A

    S125: NON-GENETIC RESISTANCE TO MENIN INHIBITION IN AML IS REVERSIBLE BY PERTURBATION OF KAT6A oleh Florian Perner, Homa Rahnamoun, Daniela V. Wenge, Yijun Xiong, Athina Apazidis, Disha Anand, Charlie Hatton, Yanhe Wen, Shengqing Gu, X Shirley Liu, Wenbin Xiao, Sheng F. Cai, Ross L. Levine, Gerard M. Mcgeehan, Scott A. Armstrong

    Diterbitkan 2023-08-01
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  20. 20
    Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium.

    Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium. oleh Reo Maruyama, Sibgat Choudhury, Adam Kowalczyk, Marina Bessarabova, Bryan Beresford-Smith, Thomas Conway, Antony Kaspi, Zhenhua Wu, Tatiana Nikolskaya, Vanessa F Merino, Pang-Kuo Lo, X Shirley Liu, Yuri Nikolsky, Saraswati Sukumar, Izhak Haviv, Kornelia Polyak

    Diterbitkan 2011-04-01
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