Hasil Pencarian - Timothy D. Read

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  1. 1
    'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.

    'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens. oleh Colin J Worby, Timothy D Read

    Diterbitkan 2015-01-01
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  2. 2
    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes

    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes oleh Robert A. Petit, Timothy D. Read

    Diterbitkan 2020-08-01
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  3. 3
    Staphylococcus aureus viewed from the perspective of 40,000+ genomes

    Staphylococcus aureus viewed from the perspective of 40,000+ genomes oleh Robert A. Petit III, Timothy D. Read

    Diterbitkan 2018-07-01
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  4. 4
    Species-Scale Genomic Analysis of Staphylococcus aureus Genes Influencing Phage Host Range and Their Relationships to Virulence and Antibiotic Resistance Genes

    Species-Scale Genomic Analysis of Staphylococcus aureus Genes Influencing Phage Host Range and Their Relationships to Virulence and Antibiotic Resistance Genes oleh Abraham G. Moller, Robert A. Petit, Timothy D. Read

    Diterbitkan 2022-02-01
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  5. 5
    Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants

    Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants oleh Hanna Marti, Sankhya Bommana, Timothy D. Read, Timothy D. Read, Theresa Pesch, Barbara Prähauser, Deborah Dean, Deborah Dean, Deborah Dean, Nicole Borel

    Diterbitkan 2021-06-01
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  6. 6
    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection

    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection oleh Jelly Vanderwoude, Sheyda Azimi, Timothy D. Read, Stephen P. Diggle

    Diterbitkan 2024-02-01
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  7. 7
    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes

    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes oleh Rohan S Mehta, Robert A Petit, Timothy D Read, Daniel B Weissman

    Diterbitkan 2023-06-01
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  8. 8
    Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains

    Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains oleh Abraham G. Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read

    Diterbitkan 2023-02-01
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  9. 9
    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange

    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange oleh Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D. Read, Hanna Marti

    Diterbitkan 2024-07-01
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  10. 10
    Genotyping of Bacillus cereus strains by microarray-based resequencing.

    Genotyping of Bacillus cereus strains by microarray-based resequencing. oleh Michael E Zwick, Maureen P Kiley, Andrew C Stewart, Alfred Mateczun, Timothy D Read

    Diterbitkan 2008-01-01
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  11. 11
    Comparative Analysis of <named-content content-type="genus-species">Chlamydia psittaci</named-content> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

    Comparative Analysis of <named-content content-type="genus-species">Chlamydia psittaci</named-content> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Hos... oleh Timothy D. Read, Sandeep J. Joseph, Xavier Didelot, Brooke Liang, Lisa Patel, Deborah Dean

    Diterbitkan 2013-05-01
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  12. 12
    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome oleh Vishnu Raghuram, Robert A. Petit, Zach Karol, Rohan Mehta, Daniel B. Weissman, Timothy D. Read

    Diterbitkan 2024-07-01
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  13. 13
    Metagenomic Shotgun Sequencing of Endocervical, Vaginal, and Rectal Samples among Fijian Women with and without Chlamydia trachomatis Reveals Disparate Microbial Populations and Function across Anatomic Sites: a Pilot Study

    Metagenomic Shotgun Sequencing of Endocervical, Vaginal, and Rectal Samples among Fijian Women with and without Chlamydia trachomatis Reveals Disparate Microbial Populations and Fu... oleh Sankhya Bommana, Gracie Richards, Mike Kama, Reshma Kodimerla, Kenan Jijakli, Timothy D. Read, Deborah Dean

    Diterbitkan 2022-06-01
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  14. 14
    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA)

    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA) oleh Michelle Su, Michelle H. Davis, Jessica Peterson, Claudia Solis-Lemus, Sarah W. Satola, Timothy D. Read

    Diterbitkan 2021-07-01
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  15. 15
    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data oleh Robert A. Petit III, James M. Hogan, Matthew N. Ezewudo, Sandeep J. Joseph, Timothy D. Read

    Diterbitkan 2018-08-01
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  16. 16
    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data oleh Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read

    Diterbitkan 2016-10-01
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  17. 17
    USA300 Staphylococcus aureus persists on multiple body sites following an infection

    USA300 Staphylococcus aureus persists on multiple body sites following an infection oleh Timothy D. Read, Robert A. Petit, Zachary Yin, Tuyaa Montgomery, Moira C. McNulty, Michael Z. David

    Diterbitkan 2018-12-01
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  18. 18
    Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

    Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. oleh Sandeep J Joseph, Ben Li, Tanvi Ghonasgi, Chad P Haase, Zhaohui S Qin, Deborah Dean, Timothy D Read

    Diterbitkan 2014-01-01
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  19. 19
    Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations

    Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations oleh Vishnu Raghuram, Ashley M. Alexander, Hui Qi Loo, Robert A. Petit, Joanna B. Goldberg, Timothy D. Read

    Diterbitkan 2022-02-01
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  20. 20
    Genotypic and Phenotypic Diversity of <named-content content-type="genus-species">Staphylococcus aureus</named-content> Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with <named-content content-type="genus-species">Pseudomonas aeruginosa</named-content>

    Genotypic and Phenotypic Diversity of <named-content content-type="genus-species">Staphylococcus aureus</named-content> Isolates from Cystic Fibrosis Patient Lung Infections and Th... oleh Eryn E. Bernardy, Robert A. Petit, Vishnu Raghuram, Ashley M. Alexander, Timothy D. Read, Joanna B. Goldberg

    Diterbitkan 2020-06-01
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