A host subtraction database for virus discovery in human cell line sequencing data [version 3; peer review: 2 approved] by Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton

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A draft genome sequence for the Ixodes scapularis cell line, ISE6 [version 1; referees: 2 approved] by Jason R. Miller, Sergey Koren, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger G. Sutton

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The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing. by Kari A Dilley, Alexander A Voorhies, Priya Luthra, Vinita Puri, Timothy B Stockwell, Hernan Lorenzi, Christopher F Basler, Reed S Shabman

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Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts. by Lisbeth Ramirez-Carvajal, Steven J Pauszek, Zaheer Ahmed, Umer Farooq, Khalid Naeem, Reed S Shabman, Timothy B Stockwell, Luis L Rodriguez

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Deep Sequencing Identifies Noncanonical Editing of Ebola and Marburg Virus RNAs in Infected Cells by Reed S. Shabman, Omar J. Jabado, Chad E. Mire, Timothy B. Stockwell, Megan Edwards, Milind Mahajan, Thomas W. Geisbert, Christopher F. Basler

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Nanoliter reactors improve multiple displacement amplification of genomes from single cells. by Yann Marcy, Thomas Ishoey, Roger S Lasken, Timothy B Stockwell, Brian P Walenz, Aaron L Halpern, Karen Y Beeson, Susanne M D Goldberg, Stephen R Quake

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Genetic variation in an individual human exome. by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, J Craig Venter

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Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid [version 1; referees: 2 approved] by Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Manolito G. Torralba, Kelvin J. Moncera, Karen Beeri, Karrie Goglin, Timothy B. Stockwell, Granger G. Sutton, Reed S. Shabman

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Isolation and Characterization of a Novel Gammaherpesvirus from a Microbat Cell Line by Reed S. Shabman, Susmita Shrivastava, Tshidi Tsibane, Oliver Attie, Anitha Jayaprakash, Chad E. Mire, Kari E. Dilley, Vinita Puri, Timothy B. Stockwell, Thomas W. Geisbert, Ravi Sachidanandam, Christopher F. Basler

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Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing. by Lance D Eckerle, Michelle M Becker, Rebecca A Halpin, Kelvin Li, Eli Venter, Xiaotao Lu, Sana Scherbakova, Rachel L Graham, Ralph S Baric, Timothy B Stockwell, David J Spiro, Mark R Denison

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Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination by Sanjay Vashee, Timothy B. Stockwell, Nina Alperovich, Evgeniya A. Denisova, Daniel G. Gibson, Kyle C. Cady, Kristofer Miller, Krishna Kannan, Daniel Malouli, Lindsey B. Crawford, Alexander A. Voorhies, Eric Bruening, Patrizia Caposio, Klaus Früh

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Phylogeography of Influenza A(H3N2) Virus in Peru, 2010–2012 by Simon Pollett, Martha I. Nelson, Matthew R. Kasper, Yeny Tinoco, Mark Simons, Candice Romero, Marita Silva, Xudong Lin, Rebecca A. Halpin, Nadia B. Fedorova, Timothy B. Stockwell, David Wentworth, Edward C. Holmes, Daniel G. Bausch

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Characterization of uncultivable bat influenza virus using a replicative synthetic virus. by Bin Zhou, Jingjiao Ma, Qinfang Liu, Bhupinder Bawa, Wei Wang, Reed S Shabman, Michael Duff, Jinhwa Lee, Yuekun Lang, Nan Cao, Abdou Nagy, Xudong Lin, Timothy B Stockwell, Juergen A Richt, David E Wentworth, Wenjun Ma

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North Atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses. by Robert J Dusek, Gunnar T Hallgrimsson, Hon S Ip, Jón E Jónsson, Srinand Sreevatsan, Sean W Nashold, Joshua L TeSlaa, Shinichiro Enomoto, Rebecca A Halpin, Xudong Lin, Nadia Fedorova, Timothy B Stockwell, Vivien G Dugan, David E Wentworth, Jeffrey S Hall

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The effective rate of influenza reassortment is limited during human infection. by Ashley Sobel Leonard, Micah T McClain, Gavin J D Smith, David E Wentworth, Rebecca A Halpin, Xudong Lin, Amy Ransier, Timothy B Stockwell, Suman R Das, Anthony S Gilbert, Rob Lambkin-Williams, Geoffrey S Ginsburg, Christopher W Woods, Katia Koelle, Christopher J R Illingworth

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Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential. by Justin Bahl, Truc T Pham, Nichola J Hill, Islam T M Hussein, Eric J Ma, Bernard C Easterday, Rebecca A Halpin, Timothy B Stockwell, David E Wentworth, Ghazi Kayali, Scott Krauss, Stacey Schultz-Cherry, Robert G Webster, Richard J Webby, Michael D Swartz, Gavin J D Smith, Jonathan A Runstadler

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A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses by Lindsey A. Moser, Lisbeth Ramirez-Carvajal, Vinita Puri, Steven J. Pauszek, Krystal Matthews, Kari A. Dilley, Clancy Mullan, Jennifer McGraw, Michael Khayat, Karen Beeri, Anthony Yee, Vivien Dugan, Mark T. Heise, Matthew B. Frieman, Luis L. Rodriguez, Kristen A. Bernard, David E. Wentworth, Timothy B. Stockwell, Reed S. Shabman

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Influenza a virus migration and persistence in North American wild birds. by Justin Bahl, Scott Krauss, Denise Kühnert, Mathieu Fourment, Garnet Raven, S Paul Pryor, Lawrence J Niles, Angela Danner, David Walker, Ian H Mendenhall, Yvonne C F Su, Vivien G Dugan, Rebecca A Halpin, Timothy B Stockwell, Richard J Webby, David E Wentworth, Alexei J Drummond, Gavin J D Smith, Robert G Webster

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Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas. by Naomi L Forrester, Joel O Wertheim, Vivian G Dugan, Albert J Auguste, David Lin, A Paige Adams, Rubing Chen, Rodion Gorchakov, Grace Leal, Jose G Estrada-Franco, Jyotsna Pandya, Rebecca A Halpin, Kumar Hari, Ravi Jain, Timothy B Stockwell, Suman R Das, David E Wentworth, Martin D Smith, Sergei L Kosakovsky Pond, Scott C Weaver

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Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia by Veasna Duong, Channa Mey, Marc Eloit, Huachen Zhu, Lucie Danet, Zhong Huang, Gang Zou, Arnaud Tarantola, Justine Cheval, Philippe Perot, Denis Laurent, Beat Richner, Santy Ky, Sothy Heng, Sok Touch, Ly Sovann, Rogier van Doorn, Thanh Tan Tran, Jeremy J Farrar, David E Wentworth, Suman R Das, Timothy B Stockwell, Jean-Claude Manuguerra, Francis Delpeyroux, Yi Guan, Ralf Altmeyer, Philippe Buchy

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