Hasil Pencarian - Siavash Mirarab

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  1. 1
    Median quartet tree search algorithms using optimal subtree prune and regraft

    Median quartet tree search algorithms using optimal subtree prune and regraft oleh Shayesteh Arasti, Siavash Mirarab

    Diterbitkan 2024-03-01
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  2. 2
    Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction

    Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction oleh Erfan Sayyari, Siavash Mirarab

    Diterbitkan 2016-11-01
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  3. 3
    TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees

    TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees oleh Uyen Mai, Siavash Mirarab

    Diterbitkan 2018-05-01
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  4. 4
    Forcing external constraints on tree inference using ASTRAL

    Forcing external constraints on tree inference using ASTRAL oleh Maryam Rabiee, Siavash Mirarab

    Diterbitkan 2020-04-01
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  5. 5
    Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates

    Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates oleh Yueyu Jiang, Puoya Tabaghi, Siavash Mirarab

    Diterbitkan 2022-08-01
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  6. 6
    Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction.

    Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction. oleh Uyen Mai, Erfan Sayyari, Siavash Mirarab

    Diterbitkan 2017-01-01
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  7. 7
    ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

    ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees oleh Chao Zhang, Maryam Rabiee, Erfan Sayyari, Siavash Mirarab

    Diterbitkan 2018-05-01
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  8. 8
    HIPPI: highly accurate protein family classification with ensembles of HMMs

    HIPPI: highly accurate protein family classification with ensembles of HMMs oleh Nam-phuong Nguyen, Michael Nute, Siavash Mirarab, Tandy Warnow

    Diterbitkan 2016-11-01
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  9. 9
    Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses.

    Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses. oleh Md Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau, Tandy Warnow

    Diterbitkan 2015-01-01
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  10. 10
    A scalable model for simulating multi-round antibody evolution and benchmarking of clonal tree reconstruction methods

    A scalable model for simulating multi-round antibody evolution and benchmarking of clonal tree reconstruction methods oleh Chao Zhang, Andrey V. Bzikadze, Yana Safonova, Siavash Mirarab

    Diterbitkan 2022-12-01
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  11. 11
    TreeCluster: Clustering biological sequences using phylogenetic trees.

    TreeCluster: Clustering biological sequences using phylogenetic trees. oleh Metin Balaban, Niema Moshiri, Uyen Mai, Xingfan Jia, Siavash Mirarab

    Diterbitkan 2019-01-01
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  12. 12
    Phylogenetic Signal of Indels and the Neoavian Radiation

    Phylogenetic Signal of Indels and the Neoavian Radiation oleh Peter Houde, Edward L. Braun, Nitish Narula, Uriel Minjares, Siavash Mirarab

    Diterbitkan 2019-07-01
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  13. 13
    Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT.

    Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT. oleh Shahab Sarmashghi, Metin Balaban, Eleonora Rachtman, Behrouz Touri, Siavash Mirarab, Vineet Bafna

    Diterbitkan 2021-11-01
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  14. 14
    Skmer: assembly-free and alignment-free sample identification using genome skims

    Skmer: assembly-free and alignment-free sample identification using genome skims oleh Shahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab

    Diterbitkan 2019-02-01
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  15. 15
    Distance-Based Phylogenetic Placement with Statistical Support

    Distance-Based Phylogenetic Placement with Statistical Support oleh Navid Bin Hasan, Metin Balaban, Avijit Biswas, Md. Shamsuzzoha Bayzid, Siavash Mirarab

    Diterbitkan 2022-08-01
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  16. 16
    Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

    Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information oleh Stefan Janssen, Daniel McDonald, Antonio Gonzalez, Jose A. Navas-Molina, Lingjing Jiang, Zhenjiang Zech Xu, Kevin Winker, Deborah M. Kado, Eric Orwoll, Mark Manary, Siavash Mirarab, Rob Knight

    Diterbitkan 2018-06-01
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  17. 17
    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 oleh Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi, Qiyun Zhu, Mattia Bolzan, Fabio Cumbo, Uyen May, Jon G. Sanders, Moreno Zolfo, Evguenia Kopylova, Edoardo Pasolli, Rob Knight, Siavash Mirarab, Curtis Huttenhower, Nicola Segata

    Diterbitkan 2020-05-01
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  18. 18
    Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

    Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea oleh Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Jon G. Sanders, Pedro Belda-Ferre, Gabriel A. Al-Ghalith, Evguenia Kopylova, Daniel McDonald, Tomasz Kosciolek, John B. Yin, Shi Huang, Nimaichand Salam, Jian-Yu Jiao, Zijun Wu, Zhenjiang Z. Xu, Kalen Cantrell, Yimeng Yang, Erfan Sayyari, Maryam Rabiee, James T. Morton, Sheila Podell, Dan Knights, Wen-Jun Li, Curtis Huttenhower, Nicola Segata, Larry Smarr, Siavash Mirarab, Rob Knight

    Diterbitkan 2019-12-01
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