Hasil Pencarian - Sameer Velankar

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  1. 1
    Whither structural biologists?

    Whither structural biologists? oleh Gerard J. Kleywegt, Sameer Velankar

    Diterbitkan 2022-07-01
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  2. 2
    Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data

    Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data oleh Preeti Choudhary, Stephen Anyango, John Berrisford, James Tolchard, Mihaly Varadi, Sameer Velankar

    Diterbitkan 2023-04-01
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  3. 3
    BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management.

    BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. oleh David Sehnal, Sebastian Bittrich, Sameer Velankar, Jaroslav Koča, Radka Svobodová, Stephen K Burley, Alexander S Rose

    Diterbitkan 2020-10-01
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  4. 4
    PDBeCIF: an open-source mmCIF/CIF parsing and processing package

    PDBeCIF: an open-source mmCIF/CIF parsing and processing package oleh Glen van Ginkel, Lukáš Pravda, José M. Dana, Mihaly Varadi, Peter Keller, Stephen Anyango, Sameer Velankar

    Diterbitkan 2021-07-01
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  5. 5
    Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

    Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature oleh Melanie Vollmar, Santosh Tirunagari, Deborah Harrus, David Armstrong, Romana Gáborová, Deepti Gupta, Marcelo Querino Lima Afonso, Genevieve Evans, Sameer Velankar

    Diterbitkan 2024-09-01
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  6. 6
    PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

    PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank oleh Ibrahim Roshan Kunnakkattu, Preeti Choudhary, Lukas Pravda, Nurul Nadzirin, Oliver S. Smart, Qi Yuan, Stephen Anyango, Sreenath Nair, Mihaly Varadi, Sameer Velankar

    Diterbitkan 2023-12-01
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  7. 7
    Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies

    Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies oleh Joseph I. J. Ellaway, Stephen Anyango, Sreenath Nair, Hossam A. Zaki, Nurul Nadzirin, Harold R. Powell, Aleksandras Gutmanas, Mihaly Varadi, Sameer Velankar

    Diterbitkan 2024-05-01
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  8. 8
    Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources [version 1; referees: 2 approved]

    Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources [version 1; referees: 2 approved] oleh David Bousfield, Johanna McEntyre, Sameer Velankar, George Papadatos, Alex Bateman, Guy Cochrane, Jee-Hyub Kim, Florian Graef, Vid Vartak, Blaise Alako, Niklas Blomberg

    Diterbitkan 2016-02-01
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  9. 9
    AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

    AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms oleh Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P. Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine Orengo

    Diterbitkan 2023-02-01
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  10. 10
    Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

    Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data oleh Sri Devan Appasamy, John Berrisford, Romana Gaborova, Sreenath Nair, Stephen Anyango, Sergei Grudinin, Mandar Deshpande, David Armstrong, Ivanna Pidruchna, Joseph I. J. Ellaway, Grisell Díaz Leines, Deepti Gupta, Deborah Harrus, Mihaly Varadi, Sameer Velankar

    Diterbitkan 2023-12-01
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  11. 11
    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) [version 1; peer review: 1 approved, 3 approved with reservations]

    A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community) [version 1; peer review: 1 approved, 3 approved with reservations] oleh Christine Orengo, Sameer Velankar, Shoshana Wodak, Vincent Zoete, Alexandre M.J.J. Bonvin, Arne Elofsson, K. Anton Feenstra, Dietland L. Gerloff, Thomas Hamelryck, John M. Hancock, Manuela Helmer-Citterich, Adam Hospital, Modesto Orozco, Anastassis Perrakis, Matthias Rarey, Claudio Soares, Joel L. Sussman, Janet M. Thornton, Pierre Tuffery, Gabor Tusnady, Rikkert Wierenga, Tiina Salminen, Bohdan Schneider

    Diterbitkan 2020-04-01
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  12. 12
    West-Life: A Virtual Research Environment for structural biology

    West-Life: A Virtual Research Environment for structural biology oleh Chris Morris, Paolo Andreetto, Lucia Banci, Alexandre M.J.J. Bonvin, Grzegorz Chojnowski, Laura del Cano, José Marıa Carazo, Pablo Conesa, Susan Daenke, George Damaskos, Andrea Giachetti, Natalie E.C. Haley, Maarten L. Hekkelman, Philipp Heuser, Robbie P. Joosten, Daniel Kouřil, Aleš Křenek, Tomáš Kulhánek, Victor S. Lamzin, Nurul Nadzirin, Anastassis Perrakis, Antonio Rosato, Fiona Sanderson, Joan Segura, Joerg Schaarschmidt, Egor Sobolev, Sergio Traldi, Mikael E. Trellet, Sameer Velankar, Marco Verlato, Martyn Winn

    Diterbitkan 2019-01-01
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  13. 13
    Community recommendations on cryoEM data archiving and validation

    Community recommendations on cryoEM data archiving and validation oleh Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors H. W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar

    Diterbitkan 2024-03-01
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