Interactive SARS-CoV-2 mutation timemaps [version 2; peer review: 1 approved, 2 approved with reservations] by René L. Warren, Inanc Birol

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HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort by René L. Warren, Inanc Birol

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Targeted assembly of short sequence reads. by René L Warren, Robert A Holt

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Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction by Chenkai Li, René L. Warren, Inanc Birol

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LongStitch: high-quality genome assembly correction and scaffolding using long reads by Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanc Birol

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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers by Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanc Birol, René L. Warren

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Management and visualization of whole genome shotgun assemblies using SAM by René L. Warren, Yaron S. Butterfield, Ryan D. Morin, Asim S. Siddiqui, Marco A. Marra, Steven J.M. Jones

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Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 by Ka Ming Nip, Saber Hafezqorani, Kristina K. Gagalova, Readman Chiu, Chen Yang, René L. Warren, Inanc Birol

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RResolver: efficient short-read repeat resolution within ABySS by Vladimir Nikolić, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol

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Linear time complexity de novo long read genome assembly with GoldRush by Johnathan Wong, Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu, René L. Warren, Inanç Birol

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Spaced Seed Data Structures for De Novo Assembly by Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren

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Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status. by William G Branton, Kristofor K Ellestad, Ferdinand Maingat, B Matt Wheatley, Erling Rud, René L Warren, Robert A Holt, Michael G Surette, Christopher Power

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The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue. by Richard A Moore, René L Warren, J Douglas Freeman, Julia A Gustavsen, Caroline Chénard, Jan M Friedman, Curtis A Suttle, Yongjun Zhao, Robert A Holt

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Enabling robust environmental DNA assay design with “unikseq” for the identification of taxon‐specific regions within whole mitochondrial genomes by Michael J. Allison, René L. Warren, M. Louie Lopez, Neha Acharya‐Patel, Jacob J. Imbery, Lauren Coombe, Cecilia L. Yang, Inanc Birol, Caren C. Helbing

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Tigmint: correcting assembly errors using linked reads from large molecules by Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol

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Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage by Diana Lin, Darcy Sutherland, Sambina Islam Aninta, Nathan Louie, Ka Ming Nip, Chenkai Li, Anat Yanai, Lauren Coombe, René L. Warren, Caren C. Helbing, Linda M. N. Hoang, Inanc Birol

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Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes by Zhuyi Xue, René L. Warren, Ewan A. Gibb, Daniel MacMillan, Johnathan Wong, Readman Chiu, S. Austin Hammond, Chen Yang, Ka Ming Nip, Catherine A. Ennis, Abigail Hahn, Sheila Reynolds, Inanc Birol

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AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens by Chenkai Li, Darcy Sutherland, S. Austin Hammond, Chen Yang, Figali Taho, Lauren Bergman, Simon Houston, René L. Warren, Titus Wong, Linda M. N. Hoang, Caroline E. Cameron, Caren C. Helbing, Inanc Birol

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Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data. by Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk, Richard A Moore, Stephen Pleasance, Robin J Coope, Joerg Bohlmann, Robert A Holt, Steven J M Jones, Inanc Birol

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Comparison of environmental DNA and SCUBA diving methods to survey keystone rockfish species on the Central Coast of British Columbia, Canada by Neha Acharya-Patel, Emma Groenwold, Matthew A. Lemay, Rute Clemente-Carvalho, Evan Morien, Sarah Dudas, Emily Rubidge, Cecilia Lingyu Yang, Lauren Coombe, René L. Warren, Alejandro Frid, Inanc Birol, Caren C. Helbing

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