Sequencing Strategies to Guide Decision Making in Cancer Treatment. by James T Topham, Marco A Marra

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Oncogenic Viruses and the Epigenome: How Viruses Hijack Epigenetic Mechanisms to Drive Cancer by Signe A. MacLennan, Marco A. Marra

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Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data by Dollina D. Dodani, Matthew H. Nguyen, Ryan D. Morin, Ryan D. Morin, Marco A. Marra, Marco A. Marra, Richard D. Corbett

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Biomechanical Consequences of Tibial Insert Thickness after Total Knee Arthroplasty: A Musculoskeletal Simulation Study by Periklis Tzanetis, Marco A. Marra, René Fluit, Bart Koopman, Nico Verdonschot

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A seriation approach for visualization-driven discovery of co-expression patterns in Serial Analysis of Gene Expression (SAGE) data. by Olena Morozova, Vyacheslav Morozov, Brad G Hoffman, Cheryl D Helgason, Marco A Marra

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Management and visualization of whole genome shotgun assemblies using SAM by René L. Warren, Yaron S. Butterfield, Ryan D. Morin, Asim S. Siddiqui, Marco A. Marra, Steven J.M. Jones

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Gait symmetry and hip strength in women with developmental dysplasia following hip arthroplasty compared to healthy subjects: A cross-sectional study. by Ruud A Leijendekkers, Marco A Marra, Sjoerd Kolk, Geert van Bon, B Wim Schreurs, Vivian Weerdesteyn, Nico Verdonschot

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TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L by Derek Wong, Lisa Sogerer, Samantha S. Lee, Victor Wong, Amy Lum, Adrian B. Levine, Marco A. Marra, Stephen Yip

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Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing by Vahid Akbari, Jean-Michel Garant, Kieran O'Neill, Pawan Pandoh, Richard Moore, Marco A Marra, Martin Hirst, Steven JM Jones

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Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase by Vahid Akbari, Jean-Michel Garant, Kieran O’Neill, Pawan Pandoh, Richard Moore, Marco A. Marra, Martin Hirst, Steven J. M. Jones

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The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy by Suganthi Chittaranjan, Jing Xu, Michael Kuzyk, Harpreet K. Dullat, James Wilton, Lindsay DeVorkin, Chandra Lebovitz, Gregg B. Morin, Marco A. Marra, Sharon M. Gorski

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Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing by Ryan D. Morin, Matthew Bainbridge, Anthony Fejes, Martin Hirst, Martin Krzywinski, Trevor J. Pugh, Helen McDonald, Richard Varhol, Steven J.M. Jones, Marco A. Marra

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Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes by Carlo Cusulin, Charles Chesnelong, Pinaki Bose, Misha Bilenky, Karen Kopciuk, Jennifer A. Chan, J. Gregory Cairncross, Steven J. Jones, Marco A. Marra, H. Artee Luchman, Samuel Weiss

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Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse. by Pavle Vrljicak, Rebecca Cullum, Eric Xu, Alex C Y Chang, Elizabeth D Wederell, Mikhail Bilenky, Steven J M Jones, Marco A Marra, Aly Karsan, Pamela A Hoodless

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Matching methods in precision oncology: An introduction and illustrative example by Deirdre Weymann, Janessa Laskin, Steven J.M. Jones, Howard Lim, Daniel J. Renouf, Robyn Roscoe, Kasmintan A. Schrader, Sophie Sun, Stephen Yip, Marco A. Marra, Dean A. Regier

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Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy by Yiqun Zhang, Fengju Chen, Erin Pleasance, Laura Williamson, Cameron J. Grisdale, Emma Titmuss, Janessa Laskin, Steven J.M. Jones, Isidro Cortes-Ciriano, Marco A. Marra, Chad J. Creighton

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Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes. by Kimberly R Blahnik, Lei Dou, Lorigail Echipare, Sushma Iyengar, Henriette O'Geen, Erica Sanchez, Yongjun Zhao, Marco A Marra, Martin Hirst, Joseph F Costello, Ian Korf, Peggy J Farnham

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TMBur: a distributable tumor mutation burden approach for whole genome sequencing by Emma Titmuss, Richard D. Corbett, Scott Davidson, Sanna Abbasi, Laura M. Williamson, Erin D. Pleasance, Adam Shlien, Daniel J. Renouf, Steven J. M. Jones, Janessa Laskin, Marco A. Marra

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Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour by Clara K. Chan, Yinghong Pan, Kendra Nyberg, Marco A. Marra, Emilia L. Lim, Steven J. M. Jones, Dianna Maar, Ewan A. Gibb, Preethi H. Gunaratne, A. Gordon Robertson, Amy C. Rowat

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A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells by Simon Haile, Richard D. Corbett, Veronique G. LeBlanc, Lisa Wei, Stephen Pleasance, Steve Bilobram, Ka Ming Nip, Kirstin Brown, Eva Trinh, Jillian Smith, Diane L. Trinh, Miruna Bala, Eric Chuah, Robin J. N. Coope, Richard A. Moore, Andrew J. Mungall, Karen L. Mungall, Yongjun Zhao, Martin Hirst, Samuel Aparicio, Inanc Birol, Inanc Birol, Steven J. M. Jones, Steven J. M. Jones, Marco A. Marra, Marco A. Marra

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