Hasil Pencarian - Justin M. Zook

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  1. 1
    Jointly benchmarking small and structural variant calls with vcfdist

    Jointly benchmarking small and structural variant calls with vcfdist oleh Tim Dunn, Justin M. Zook, James M. Holt, Satish Narayanasamy

    Diterbitkan 2024-10-01
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  2. 2
    Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data

    Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data oleh Nathan D. Olson, Justin M. Zook, Jayne B. Morrow, Nancy J. Lin

    Diterbitkan 2017-09-01
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  3. 3
    Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing.

    Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing. oleh Justin M Zook, Daniel Samarov, Jennifer McDaniel, Shurjo K Sen, Marc Salit

    Diterbitkan 2012-01-01
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  4. 4
    LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads

    LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads oleh Helyaneh Ziaei Jam, Justin M. Zook, Sara Javadzadeh, Jonghun Park, Aarushi Sehgal, Melissa Gymrek

    Diterbitkan 2024-07-01
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  5. 5
    StratoMod: predicting sequencing and variant calling errors with interpretable machine learning

    StratoMod: predicting sequencing and variant calling errors with interpretable machine learning oleh Nathan Dwarshuis, Peter Tonner, Nathan D. Olson, Fritz J. Sedlazeck, Justin Wagner, Justin M. Zook

    Diterbitkan 2024-10-01
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  6. 6
    Tools for annotation and comparison of structural variation [version 1; referees: 1 approved, 2 approved with reservations]

    Tools for annotation and comparison of structural variation [version 1; referees: 1 approved, 2 approved with reservations] oleh Fritz J. Sedlazeck, Andi Dhroso, Dale L. Bodian, Justin Paschall, Farrah Hermes, Justin M. Zook

    Diterbitkan 2017-10-01
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  7. 7
    Assembly and annotation of an Ashkenazi human reference genome

    Assembly and annotation of an Ashkenazi human reference genome oleh Alaina Shumate, Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin M. Wagner, Nathan D. Olson, Mihaela Pertea, Marc L. Salit, Justin M. Zook, Steven L. Salzberg

    Diterbitkan 2020-06-01
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  8. 8
    FixItFelix: improving genomic analysis by fixing reference errors

    FixItFelix: improving genomic analysis by fixing reference errors oleh Sairam Behera, Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek, Daniela C. Soto, Stephen C. J. Parker, Albert V. Smith, Megan Y. Dennis, Justin M. Zook, Fritz J. Sedlazeck

    Diterbitkan 2023-02-01
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  9. 9
    The GIAB genomic stratifications resource for human reference genomes

    The GIAB genomic stratifications resource for human reference genomes oleh Nathan Dwarshuis, Divya Kalra, Jennifer McDaniel, Philippe Sanio, Pilar Alvarez Jerez, Bharati Jadhav, Wenyu (Eddy) Huang, Rajarshi Mondal, Ben Busby, Nathan D. Olson, Fritz J. Sedlazeck, Justin Wagner, Sina Majidian, Justin M. Zook

    Diterbitkan 2024-10-01
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  10. 10
    Best Practices for Evaluating Single Nucleotide Variant Calling Methods for Microbial Genomics

    Best Practices for Evaluating Single Nucleotide Variant Calling Methods for Microbial Genomics oleh Nathan eOlson, Steven P. Lund, Rebecca E. Colman, Jeffrey T Foster, Jason W Sahl, James M Schupp, Paul eKeim, Paul eKeim, Jayne B Morrow, Marc L Salit, Marc L Salit, Justin M Zook

    Diterbitkan 2015-07-01
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  11. 11
    A diploid assembly-based benchmark for variants in the major histocompatibility complex

    A diploid assembly-based benchmark for variants in the major histocompatibility complex oleh Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate, Michael C. Schatz, Chunlin Xiao, William J. Rowell, Charles Markello, Jesse Farek, Fritz J. Sedlazeck, Vikas Bansal, Byunggil Yoo, Neil Miller, Xin Zhou, Andrew Carroll, Alvaro Martinez Barrio, Marc Salit, Tobias Marschall, Alexander T. Dilthey, Justin M. Zook

    Diterbitkan 2020-09-01
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  12. 12
    A crowdsourced set of curated structural variants for the human genome.

    A crowdsourced set of curated structural variants for the human genome. oleh Lesley M Chapman, Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi, Christopher M Watson, Christos Proukakis, Wayne E Clarke, Naoki Nariai, Eric Dawson, Garan Jones, Daniel Blankenberg, Christian Brueffer, Chunlin Xiao, Sree Rohit Raj Kolora, Noah Alexander, Paul Wolujewicz, Azza E Ahmed, Graeme Smith, Saadlee Shehreen, Aaron M Wenger, Marc Salit, Justin M Zook

    Diterbitkan 2020-06-01
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  13. 13
    A strategy for building and using a human reference pangenome [version 2; peer review: 2 approved]

    A strategy for building and using a human reference pangenome [version 2; peer review: 2 approved] oleh Bastien Llamas, Giuseppe Narzisi, Valerie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt, Peter Bradbury, Xian Chang, Chen-Shan Chin, Arkarachai Fungtammasan, Wayne E. Clarke, Alan Cleary, Jana Ebler, Jordan Eizenga, Jonas A. Sibbesen, Charles J. Markello, Erik Garrison, Shilpa Garg, Glenn Hickey, Gerard R. Lazo, Michael F. Lin, Medhat Mahmoud, Tobias Marschall, Ilia Minkin, Jean Monlong, Rajeeva L. Musunuri, Sagayamary Sagayaradj, Adam M. Novak, Mikko Rautiainen, Allison Regier, Fritz J. Sedlazeck, Jouni Siren, Yassine Souilmi, Justin Wagner, Travis Wrightsman, Toshiyuki T. Yokoyama, Qiandong Zeng, Justin M. Zook, Benedict Paten, Ben Busby

    Diterbitkan 2021-07-01
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  14. 14
    Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

    Assessing reproducibility of inherited variants detected with short-read whole genome sequencing oleh Bohu Pan, Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma, Len Trigg, Andreas Scherer, Baitang Ning, Chaoyang Zhang, Christine Glidewell-Kenney, Chunlin Xiao, Eric Donaldson, Fritz J. Sedlazeck, Gary Schroth, Gokhan Yavas, Haiying Grunenwald, Haodong Chen, Heather Meinholz, Joe Meehan, Jing Wang, Jingcheng Yang, Jonathan Foox, Jun Shang, Kelci Miclaus, Lianhua Dong, Leming Shi, Marghoob Mohiyuddin, Mehdi Pirooznia, Ping Gong, Rooz Golshani, Russ Wolfinger, Samir Lababidi, Sayed Mohammad Ebrahim Sahraeian, Steve Sherry, Tao Han, Tao Chen, Tieliu Shi, Wanwan Hou, Weigong Ge, Wen Zou, Wenjing Guo, Wenjun Bao, Wenzhong Xiao, Xiaohui Fan, Yoichi Gondo, Ying Yu, Yongmei Zhao, Zhenqiang Su, Zhichao Liu, Weida Tong, Wenming Xiao, Justin M. Zook, Yuanting Zheng, Huixiao Hong

    Diterbitkan 2022-01-01
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